Strain Fitness in Escherichia coli BW25113 around b2510

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntxseA and b2510 overlap by 4 nucleotidesb2510 and b2511 are separated by 69 nucleotides b2509: xseA - exodeoxyribonuclease VII large subunit (NCBI), at 2,632,254 to 2,633,624 xseA b2510: b2510 - orf, hypothetical protein (VIMSS), at 2,633,621 to 2,633,836 b2510 b2511: b2511 - putative GTP-binding factor (VIMSS), at 2,633,906 to 2,635,378 b2511 Position (kb) 2633 2634Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2632.658 kb on + strand, within xseAat 2632.658 kb on + strand, within xseAat 2632.670 kb on + strand, within xseAat 2632.670 kb on + strand, within xseAat 2632.688 kb on - strand, within xseAat 2632.688 kb on - strandat 2632.729 kb on + strand, within xseAat 2632.729 kb on + strand, within xseAat 2632.771 kb on - strand, within xseAat 2632.911 kb on + strand, within xseAat 2632.969 kb on + strand, within xseAat 2633.042 kb on - strand, within xseAat 2633.126 kb on + strand, within xseAat 2633.166 kb on - strand, within xseAat 2633.387 kb on + strand, within xseAat 2633.387 kb on + strand, within xseAat 2633.427 kb on - strand, within xseAat 2633.427 kb on - strand, within xseAat 2633.440 kb on + strand, within xseAat 2633.691 kb on + strand, within b2510at 2633.721 kb on - strand, within b2510at 2633.787 kb on + strand, within b2510at 2633.787 kb on + strand, within b2510at 2633.795 kb on - strand, within b2510at 2633.805 kb on - strand, within b2510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
2,632,658 + xseA b2509 0.29 -1.1
2,632,658 + xseA b2509 0.29 -0.2
2,632,670 + xseA b2509 0.30 -2.2
2,632,670 + xseA b2509 0.30 -0.2
2,632,688 - xseA b2509 0.32 -0.5
2,632,688 - +1.9
2,632,729 + xseA b2509 0.35 +2.1
2,632,729 + xseA b2509 0.35 -1.0
2,632,771 - xseA b2509 0.38 +1.1
2,632,911 + xseA b2509 0.48 +0.0
2,632,969 + xseA b2509 0.52 -0.2
2,633,042 - xseA b2509 0.57 -0.1
2,633,126 + xseA b2509 0.64 -0.1
2,633,166 - xseA b2509 0.67 +0.8
2,633,387 + xseA b2509 0.83 +1.3
2,633,387 + xseA b2509 0.83 +1.3
2,633,427 - xseA b2509 0.86 +4.3
2,633,427 - xseA b2509 0.86 +2.2
2,633,440 + xseA b2509 0.87 -0.2
2,633,691 + b2510 b2510 0.32 +0.3
2,633,721 - b2510 b2510 0.46 -1.6
2,633,787 + b2510 b2510 0.77 -1.8
2,633,787 + b2510 b2510 0.77 -1.0
2,633,795 - b2510 b2510 0.81 -0.0
2,633,805 - b2510 b2510 0.85 -0.1

Or see this region's nucleotide sequence