Strain Fitness in Escherichia coli BW25113 around b2461
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,572,113 | + | eutT | b2459 | 0.73 | +0.8 |
2,572,134 | + | eutT | b2459 | 0.76 | +0.5 |
2,572,134 | + | eutT | b2459 | 0.76 | +1.1 |
2,572,153 | - | eutT | b2459 | 0.78 | +0.3 |
2,572,405 | + | eutQ | b2460 | 0.12 | +0.3 |
2,572,471 | - | eutQ | b2460 | 0.21 | -0.7 |
2,572,471 | - | eutQ | b2460 | 0.21 | -2.3 |
2,572,477 | + | eutQ | b2460 | 0.22 | -2.7 |
2,572,539 | + | eutQ | b2460 | 0.31 | -1.0 |
2,572,539 | + | eutQ | b2460 | 0.31 | -1.5 |
2,572,539 | + | eutQ | b2460 | 0.31 | +1.0 |
2,572,539 | + | eutQ | b2460 | 0.31 | +0.8 |
2,572,584 | - | eutQ | b2460 | 0.37 | +1.3 |
2,573,126 | + | eutP | b2461 | 0.26 | +0.5 |
2,573,186 | - | eutP | b2461 | 0.39 | +1.1 |
2,573,186 | - | eutP | b2461 | 0.39 | +2.3 |
2,573,222 | - | eutP | b2461 | 0.46 | -0.7 |
2,573,225 | + | eutP | b2461 | 0.47 | +2.3 |
2,573,225 | + | eutP | b2461 | 0.47 | +2.3 |
2,573,237 | - | eutP | b2461 | 0.49 | +0.7 |
2,573,260 | + | eutP | b2461 | 0.54 | -0.5 |
2,573,260 | + | eutP | b2461 | 0.54 | -2.5 |
2,573,278 | + | eutP | b2461 | 0.58 | -0.5 |
2,573,278 | + | eutP | b2461 | 0.58 | +0.7 |
2,573,279 | - | eutP | b2461 | 0.58 | +0.3 |
2,573,281 | + | eutP | b2461 | 0.59 | -0.3 |
2,573,281 | + | eutP | b2461 | 0.59 | -0.6 |
2,573,281 | + | eutP | b2461 | 0.59 | +2.6 |
2,573,281 | + | eutP | b2461 | 0.59 | -1.3 |
2,573,281 | + | eutP | b2461 | 0.59 | -2.4 |
2,573,281 | - | eutP | b2461 | 0.59 | +1.0 |
2,573,281 | - | eutP | b2461 | 0.59 | -1.0 |
2,573,282 | + | eutP | b2461 | 0.59 | +0.8 |
2,573,282 | + | eutP | b2461 | 0.59 | +0.1 |
2,573,283 | + | eutP | b2461 | 0.59 | -1.5 |
2,573,283 | + | eutP | b2461 | 0.59 | +0.6 |
2,573,283 | + | eutP | b2461 | 0.59 | -1.7 |
2,573,284 | - | eutP | b2461 | 0.59 | -2.7 |
2,573,286 | - | eutP | b2461 | 0.60 | +1.1 |
2,573,291 | - | eutP | b2461 | 0.61 | -0.4 |
2,573,291 | - | eutP | b2461 | 0.61 | -0.5 |
2,573,304 | + | eutP | b2461 | 0.63 | -0.8 |
2,573,304 | + | eutP | b2461 | 0.63 | +1.3 |
2,573,304 | + | eutP | b2461 | 0.63 | +1.7 |
2,573,312 | - | eutP | b2461 | 0.65 | -2.4 |
2,573,315 | + | eutP | b2461 | 0.66 | +1.4 |
2,573,355 | - | eutP | b2461 | 0.74 | +1.1 |
2,573,356 | - | eutP | b2461 | 0.74 | -0.9 |
2,573,399 | - | eutP | b2461 | 0.83 | +1.5 |
2,573,399 | - | eutP | b2461 | 0.83 | +2.0 |
2,573,459 | + | -2.7 | |||
2,573,459 | - | +0.9 | |||
2,573,459 | - | +0.3 | |||
2,573,459 | - | +0.5 | |||
2,573,496 | - | -0.5 | |||
2,573,496 | - | -1.7 | |||
2,573,496 | - | +0.3 | |||
2,573,497 | - | +1.0 | |||
2,573,550 | + | b2462 | b2462 | 0.17 | +1.0 |
2,573,560 | - | b2462 | b2462 | 0.20 | -0.3 |
2,573,562 | - | b2462 | b2462 | 0.21 | +0.3 |
2,573,562 | - | b2462 | b2462 | 0.21 | +0.6 |
2,573,562 | - | b2462 | b2462 | 0.21 | +2.6 |
2,573,572 | - | b2462 | b2462 | 0.24 | -0.1 |
2,573,572 | - | b2462 | b2462 | 0.24 | +0.6 |
2,573,581 | - | b2462 | b2462 | 0.26 | -0.1 |
2,573,581 | - | b2462 | b2462 | 0.26 | -0.8 |
2,573,604 | - | b2462 | b2462 | 0.33 | +0.8 |
2,573,606 | + | b2462 | b2462 | 0.34 | +0.8 |
2,573,751 | - | b2462 | b2462 | 0.77 | -1.7 |
2,573,774 | - | b2462 | b2462 | 0.84 | +0.1 |
2,573,774 | - | b2462 | b2462 | 0.84 | +2.2 |
2,573,775 | + | b2462 | b2462 | 0.84 | -0.3 |
2,573,783 | - | b2462 | b2462 | 0.87 | +0.5 |
2,573,784 | - | b2462 | b2462 | 0.87 | -1.8 |
2,573,792 | - | b2462 | b2462 | 0.89 | -0.1 |
2,573,818 | + | -2.1 | |||
2,573,830 | + | +2.3 | |||
2,573,830 | + | -1.0 | |||
2,573,838 | - | +2.7 | |||
2,573,838 | - | +0.8 | |||
2,573,886 | + | +1.3 | |||
2,573,928 | - | +0.3 | |||
2,573,933 | - | -2.5 | |||
2,573,963 | + | +0.8 | |||
2,573,963 | + | +1.1 | |||
2,574,083 | - | -0.6 | |||
2,574,103 | - | -0.6 | |||
2,574,133 | - | +1.1 | |||
2,574,145 | + | -0.7 | |||
2,574,148 | - | +0.1 | |||
2,574,152 | - | +1.7 | |||
2,574,158 | + | -1.0 | |||
2,574,158 | + | +2.3 | |||
2,574,170 | + | -0.3 | |||
2,574,173 | - | -0.8 | |||
2,574,187 | - | +0.6 | |||
2,574,187 | - | -2.1 | |||
2,574,190 | - | +0.3 | |||
2,574,202 | - | +0.2 | |||
2,574,216 | + | +1.3 | |||
2,574,225 | + | -1.5 | |||
2,574,233 | - | -2.0 | |||
2,574,378 | - | maeB | b2463 | 0.11 | -0.7 |
2,574,380 | + | maeB | b2463 | 0.11 | +1.4 |
Or see this region's nucleotide sequence