Strain Fitness in Escherichia coli BW25113 around b2341
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,454,088 | - | +0.2 | |||
2,454,088 | - | +0.2 | |||
2,454,178 | - | +0.3 | |||
2,454,185 | - | +1.7 | |||
2,454,201 | - | +0.2 | |||
2,454,201 | - | +0.6 | |||
2,454,216 | - | +3.3 | |||
2,454,268 | - | -0.2 | |||
2,454,275 | - | -1.1 | |||
2,454,275 | - | -0.8 | |||
2,454,280 | + | -0.8 | |||
2,454,290 | - | -0.0 | |||
2,454,290 | - | +0.4 | |||
2,454,295 | - | +0.2 | |||
2,454,295 | - | +0.2 | |||
2,454,330 | - | -1.3 | |||
2,454,375 | - | -2.0 | |||
2,454,375 | - | -0.8 | |||
2,454,389 | - | +1.2 | |||
2,454,476 | + | sixA | b2340 | 0.26 | +1.2 |
2,454,476 | + | sixA | b2340 | 0.26 | -0.1 |
2,454,482 | - | sixA | b2340 | 0.27 | -2.8 |
2,454,509 | + | sixA | b2340 | 0.33 | +0.2 |
2,454,520 | + | sixA | b2340 | 0.35 | -0.5 |
2,454,535 | - | sixA | b2340 | 0.38 | -0.1 |
2,454,535 | - | sixA | b2340 | 0.38 | -2.9 |
2,454,550 | - | sixA | b2340 | 0.41 | +0.6 |
2,454,584 | - | sixA | b2340 | 0.48 | -1.1 |
2,454,584 | - | sixA | b2340 | 0.48 | -0.3 |
2,455,035 | + | -0.2 | |||
2,455,071 | + | +2.4 | |||
2,455,071 | + | -1.6 | |||
2,455,084 | + | +0.6 | |||
2,455,185 | + | -0.8 | |||
2,455,185 | + | +2.4 | |||
2,455,262 | + | yfcX | b2341 | 0.10 | -2.6 |
2,455,268 | + | yfcX | b2341 | 0.11 | +1.1 |
2,455,321 | + | yfcX | b2341 | 0.13 | -2.9 |
2,455,414 | - | yfcX | b2341 | 0.18 | +2.9 |
2,455,418 | - | yfcX | b2341 | 0.18 | +1.6 |
2,455,587 | - | yfcX | b2341 | 0.26 | +2.1 |
2,455,620 | + | yfcX | b2341 | 0.27 | -0.6 |
2,455,796 | - | yfcX | b2341 | 0.35 | +0.5 |
2,456,145 | + | yfcX | b2341 | 0.52 | +0.9 |
2,456,145 | + | yfcX | b2341 | 0.52 | +0.0 |
2,456,175 | - | yfcX | b2341 | 0.53 | -0.4 |
2,456,253 | + | yfcX | b2341 | 0.57 | +1.0 |
2,456,253 | + | yfcX | b2341 | 0.57 | +0.6 |
2,456,383 | + | yfcX | b2341 | 0.63 | -2.4 |
2,456,402 | - | yfcX | b2341 | 0.64 | -0.4 |
2,456,425 | + | yfcX | b2341 | 0.65 | +0.4 |
2,456,425 | + | yfcX | b2341 | 0.65 | +0.5 |
2,456,544 | + | yfcX | b2341 | 0.70 | -1.1 |
2,456,614 | + | yfcX | b2341 | 0.74 | -2.0 |
2,456,614 | + | yfcX | b2341 | 0.74 | +0.3 |
2,456,617 | - | yfcX | b2341 | 0.74 | -1.8 |
2,456,617 | - | yfcX | b2341 | 0.74 | -0.4 |
2,456,663 | - | yfcX | b2341 | 0.76 | +0.9 |
2,456,684 | + | yfcX | b2341 | 0.77 | -2.8 |
2,456,747 | + | yfcX | b2341 | 0.80 | +0.8 |
2,456,747 | + | yfcX | b2341 | 0.80 | +0.2 |
2,456,771 | + | yfcX | b2341 | 0.81 | +1.8 |
2,456,771 | + | yfcX | b2341 | 0.81 | +0.2 |
2,457,130 | - | +1.3 | |||
2,457,130 | - | +1.7 | |||
2,457,241 | + | -2.8 | |||
2,457,268 | - | +1.7 | |||
2,457,326 | - | yfcY | b2342 | 0.11 | +0.6 |
2,457,381 | + | yfcY | b2342 | 0.15 | +1.8 |
2,457,473 | + | yfcY | b2342 | 0.22 | +2.0 |
2,457,532 | + | yfcY | b2342 | 0.27 | +0.3 |
2,457,532 | + | yfcY | b2342 | 0.27 | -1.8 |
2,457,535 | - | yfcY | b2342 | 0.27 | +1.6 |
2,457,539 | - | yfcY | b2342 | 0.27 | -0.8 |
2,457,561 | + | yfcY | b2342 | 0.29 | +0.1 |
2,457,636 | - | yfcY | b2342 | 0.35 | -0.2 |
2,457,876 | + | yfcY | b2342 | 0.53 | -2.3 |
Or see this region's nucleotide sequence