Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoB and yfaP are separated by 73 nucleotides yfaP and yfaQ are separated by 4 nucleotides yfaQ and yfaS are separated by 0 nucleotides
b2224: atoB - acetyl-CoA acetyltransferase (NCBI), at 2,324,131 to 2,325,315
atoB
b2225: yfaP - hypothetical protein (NCBI), at 2,325,389 to 2,326,165
yfaP
b2226: yfaQ - hypothetical protein (NCBI), at 2,326,170 to 2,327,819
yfaQ
b4500: yfaS - no description, at 2,327,820 to 2,332,424
yfaS
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2325.215 kb on - strand at 2325.222 kb on - strand at 2325.224 kb on - strand at 2325.224 kb on - strand at 2325.226 kb on + strand at 2325.354 kb on + strand at 2325.354 kb on + strand at 2325.393 kb on - strand at 2325.393 kb on - strand at 2325.488 kb on + strand, within yfaP at 2325.526 kb on + strand, within yfaP at 2325.537 kb on - strand, within yfaP at 2325.555 kb on - strand, within yfaP at 2325.623 kb on - strand, within yfaP at 2325.623 kb on - strand, within yfaP at 2325.656 kb on - strand, within yfaP at 2325.756 kb on + strand, within yfaP at 2325.759 kb on - strand, within yfaP at 2325.970 kb on + strand, within yfaP at 2325.970 kb on + strand, within yfaP at 2326.112 kb on - strand at 2326.112 kb on - strand at 2326.209 kb on + strand at 2326.209 kb on + strand at 2326.237 kb on - strand at 2326.286 kb on - strand at 2326.338 kb on - strand, within yfaQ at 2326.388 kb on - strand, within yfaQ at 2326.388 kb on - strand, within yfaQ at 2326.393 kb on - strand, within yfaQ at 2326.394 kb on - strand, within yfaQ at 2326.397 kb on - strand, within yfaQ at 2326.490 kb on + strand, within yfaQ at 2326.531 kb on + strand, within yfaQ at 2326.531 kb on + strand, within yfaQ at 2326.551 kb on + strand, within yfaQ at 2326.584 kb on + strand, within yfaQ at 2326.675 kb on + strand, within yfaQ at 2326.690 kb on + strand, within yfaQ at 2326.803 kb on - strand, within yfaQ at 2326.803 kb on - strand, within yfaQ at 2326.893 kb on + strand at 2326.954 kb on + strand, within yfaQ at 2326.954 kb on + strand, within yfaQ at 2326.954 kb on + strand, within yfaQ at 2327.035 kb on + strand, within yfaQ at 2327.053 kb on - strand, within yfaQ at 2327.053 kb on - strand, within yfaQ at 2327.135 kb on + strand, within yfaQ at 2327.135 kb on + strand, within yfaQ at 2327.178 kb on - strand, within yfaQ at 2327.244 kb on + strand, within yfaQ at 2327.256 kb on - strand, within yfaQ at 2327.266 kb on - strand, within yfaQ at 2327.294 kb on - strand, within yfaQ at 2327.394 kb on + strand, within yfaQ at 2327.394 kb on + strand, within yfaQ at 2327.444 kb on - strand, within yfaQ at 2327.450 kb on - strand, within yfaQ at 2327.505 kb on - strand, within yfaQ at 2327.505 kb on - strand, within yfaQ at 2327.529 kb on + strand, within yfaQ at 2327.552 kb on - strand, within yfaQ at 2327.587 kb on - strand, within yfaQ at 2327.649 kb on - strand, within yfaQ at 2327.667 kb on + strand at 2327.798 kb on + strand at 2327.821 kb on + strand at 2327.878 kb on + strand at 2327.878 kb on + strand at 2327.889 kb on - strand at 2327.981 kb on + strand at 2327.986 kb on + strand at 2327.986 kb on + strand at 2327.986 kb on + strand at 2328.074 kb on + strand at 2328.155 kb on - strand at 2328.155 kb on - strand at 2328.215 kb on + strand at 2328.229 kb on - strand at 2328.229 kb on - strand at 2328.256 kb on - strand at 2328.314 kb on + strand, within yfaS at 2328.389 kb on - strand, within yfaS at 2328.389 kb on - strand, within yfaS at 2328.518 kb on + strand, within yfaS at 2328.538 kb on - strand, within yfaS at 2328.561 kb on + strand, within yfaS at 2328.561 kb on + strand, within yfaS at 2328.593 kb on + strand, within yfaS at 2328.631 kb on + strand, within yfaS at 2328.673 kb on + strand, within yfaS
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 2,325,215 - +0.7 2,325,222 - -0.9 2,325,224 - +3.3 2,325,224 - +1.1 2,325,226 + -2.0 2,325,354 + +1.6 2,325,354 + +0.8 2,325,393 - +1.2 2,325,393 - -0.9 2,325,488 + yfaP b2225 0.13 +1.0 2,325,526 + yfaP b2225 0.18 -1.2 2,325,537 - yfaP b2225 0.19 -0.1 2,325,555 - yfaP b2225 0.21 -1.9 2,325,623 - yfaP b2225 0.30 -0.9 2,325,623 - yfaP b2225 0.30 +0.4 2,325,656 - yfaP b2225 0.34 -0.2 2,325,756 + yfaP b2225 0.47 -1.0 2,325,759 - yfaP b2225 0.48 -0.4 2,325,970 + yfaP b2225 0.75 +1.5 2,325,970 + yfaP b2225 0.75 +0.1 2,326,112 - +0.6 2,326,112 - -0.6 2,326,209 + -0.4 2,326,209 + +1.1 2,326,237 - -1.4 2,326,286 - -0.1 2,326,338 - yfaQ b2226 0.10 +1.6 2,326,388 - yfaQ b2226 0.13 -1.2 2,326,388 - yfaQ b2226 0.13 +2.1 2,326,393 - yfaQ b2226 0.14 -1.5 2,326,394 - yfaQ b2226 0.14 -0.1 2,326,397 - yfaQ b2226 0.14 +1.0 2,326,490 + yfaQ b2226 0.19 +0.5 2,326,531 + yfaQ b2226 0.22 +0.1 2,326,531 + yfaQ b2226 0.22 +3.7 2,326,551 + yfaQ b2226 0.23 +2.3 2,326,584 + yfaQ b2226 0.25 +1.8 2,326,675 + yfaQ b2226 0.31 +0.6 2,326,690 + yfaQ b2226 0.32 -2.3 2,326,803 - yfaQ b2226 0.38 -0.0 2,326,803 - yfaQ b2226 0.38 +0.8 2,326,893 + -0.9 2,326,954 + yfaQ b2226 0.48 +0.1 2,326,954 + yfaQ b2226 0.48 +2.3 2,326,954 + yfaQ b2226 0.48 +2.4 2,327,035 + yfaQ b2226 0.52 +1.1 2,327,053 - yfaQ b2226 0.54 -1.7 2,327,053 - yfaQ b2226 0.54 -0.1 2,327,135 + yfaQ b2226 0.58 -0.9 2,327,135 + yfaQ b2226 0.58 -1.3 2,327,178 - yfaQ b2226 0.61 +2.7 2,327,244 + yfaQ b2226 0.65 +0.9 2,327,256 - yfaQ b2226 0.66 +0.5 2,327,266 - yfaQ b2226 0.66 +0.3 2,327,294 - yfaQ b2226 0.68 +3.1 2,327,394 + yfaQ b2226 0.74 +0.1 2,327,394 + yfaQ b2226 0.74 -0.7 2,327,444 - yfaQ b2226 0.77 +1.4 2,327,450 - yfaQ b2226 0.78 +2.1 2,327,505 - yfaQ b2226 0.81 -0.3 2,327,505 - yfaQ b2226 0.81 +1.3 2,327,529 + yfaQ b2226 0.82 -0.4 2,327,552 - yfaQ b2226 0.84 -1.2 2,327,587 - yfaQ b2226 0.86 +0.5 2,327,649 - yfaQ b2226 0.90 +0.9 2,327,667 + -0.6 2,327,798 + +1.5 2,327,821 + +1.8 2,327,878 + -0.3 2,327,878 + +2.7 2,327,889 - -1.0 2,327,981 + -1.2 2,327,986 + +1.3 2,327,986 + +0.8 2,327,986 + +0.7 2,328,074 + +1.1 2,328,155 - +0.1 2,328,155 - -0.2 2,328,215 + -2.4 2,328,229 - +1.1 2,328,229 - -0.4 2,328,256 - +0.5 2,328,314 + yfaS b4500 0.11 -0.4 2,328,389 - yfaS b4500 0.12 -0.2 2,328,389 - yfaS b4500 0.12 +1.8 2,328,518 + yfaS b4500 0.15 +0.8 2,328,538 - yfaS b4500 0.16 +0.1 2,328,561 + yfaS b4500 0.16 +0.5 2,328,561 + yfaS b4500 0.16 -0.7 2,328,593 + yfaS b4500 0.17 +1.5 2,328,631 + yfaS b4500 0.18 -0.5 2,328,673 + yfaS b4500 0.19 +0.4
Or see this region's nucleotide sequence