Strain Fitness in Escherichia coli BW25113 around b2183

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbcr and rsuA are separated by 27 nucleotidesrsuA and yejH are separated by 148 nucleotides b2182: bcr - bicyclomycin/multidrug efflux system (NCBI), at 2,276,592 to 2,277,782 bcr b2183: rsuA - 16S rRNA pseudouridylate 516 synthase (NCBI), at 2,277,810 to 2,278,505 rsuA b2184: yejH - DNA damage response helicase (yejH or radD) (from data), at 2,278,654 to 2,280,414 yejH Position (kb) 2277 2278 2279Strain fitness (log2 ratio) -2 -1 0 1 2at 2276.885 kb on - strand, within bcrat 2276.892 kb on - strand, within bcrat 2276.892 kb on - strand, within bcrat 2276.950 kb on - strand, within bcrat 2276.950 kb on - strand, within bcrat 2277.132 kb on + strand, within bcrat 2277.137 kb on + strand, within bcrat 2277.197 kb on + strand, within bcrat 2277.287 kb on + strand, within bcrat 2277.287 kb on + strand, within bcrat 2277.352 kb on - strand, within bcrat 2277.352 kb on - strand, within bcrat 2277.352 kb on - strand, within bcrat 2277.422 kb on - strand, within bcrat 2277.445 kb on + strand, within bcrat 2277.573 kb on + strand, within bcrat 2277.625 kb on - strand, within bcrat 2277.628 kb on - strand, within bcrat 2277.641 kb on + strand, within bcrat 2277.695 kb on + strandat 2277.695 kb on + strandat 2277.696 kb on + strandat 2277.759 kb on + strandat 2277.767 kb on + strandat 2278.002 kb on - strand, within rsuAat 2278.018 kb on - strand, within rsuAat 2278.126 kb on - strand, within rsuAat 2278.173 kb on + strand, within rsuAat 2278.266 kb on - strand, within rsuAat 2278.285 kb on - strand, within rsuAat 2278.462 kb on - strandat 2278.560 kb on - strandat 2278.678 kb on - strandat 2278.720 kb on + strandat 2278.720 kb on + strandat 2278.785 kb on + strandat 2278.785 kb on + strandat 2278.824 kb on + strandat 2278.824 kb on + strandat 2278.834 kb on - strand, within yejHat 2278.845 kb on + strand, within yejHat 2278.897 kb on + strand, within yejHat 2279.324 kb on - strand, within yejHat 2279.324 kb on - strand, within yejHat 2279.480 kb on + strand, within yejH

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,276,885 - bcr b2182 0.25 -0.2
2,276,892 - bcr b2182 0.25 +1.7
2,276,892 - bcr b2182 0.25 +1.1
2,276,950 - bcr b2182 0.30 -0.4
2,276,950 - bcr b2182 0.30 -0.4
2,277,132 + bcr b2182 0.45 +0.7
2,277,137 + bcr b2182 0.46 +1.7
2,277,197 + bcr b2182 0.51 +2.5
2,277,287 + bcr b2182 0.58 +0.7
2,277,287 + bcr b2182 0.58 -0.4
2,277,352 - bcr b2182 0.64 -2.0
2,277,352 - bcr b2182 0.64 +1.5
2,277,352 - bcr b2182 0.64 -1.2
2,277,422 - bcr b2182 0.70 -1.2
2,277,445 + bcr b2182 0.72 +1.4
2,277,573 + bcr b2182 0.82 -1.4
2,277,625 - bcr b2182 0.87 +0.9
2,277,628 - bcr b2182 0.87 -2.0
2,277,641 + bcr b2182 0.88 +0.4
2,277,695 + +1.4
2,277,695 + +0.9
2,277,696 + -0.6
2,277,759 + -1.3
2,277,767 + -0.7
2,278,002 - rsuA b2183 0.28 +0.4
2,278,018 - rsuA b2183 0.30 +1.7
2,278,126 - rsuA b2183 0.45 +0.1
2,278,173 + rsuA b2183 0.52 +0.3
2,278,266 - rsuA b2183 0.66 +1.6
2,278,285 - rsuA b2183 0.68 -1.2
2,278,462 - +0.7
2,278,560 - -0.3
2,278,678 - -2.4
2,278,720 + +1.1
2,278,720 + +0.1
2,278,785 + +1.5
2,278,785 + -1.2
2,278,824 + +1.1
2,278,824 + +2.0
2,278,834 - yejH b2184 0.10 -1.0
2,278,845 + yejH b2184 0.11 -0.7
2,278,897 + yejH b2184 0.14 +1.1
2,279,324 - yejH b2184 0.38 +0.1
2,279,324 - yejH b2184 0.38 +2.7
2,279,480 + yejH b2184 0.47 +1.9

Or see this region's nucleotide sequence