Strain Fitness in Escherichia coli BW25113 around b2180

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyejE and yejF are separated by 1 nucleotidesyejF and yejG are separated by 3 nucleotidesyejG and bcr are separated by 332 nucleotides b2179: yejE - predicted oligopeptide transporter subunit (NCBI), at 2,273,295 to 2,274,320 yejE b2180: yejF - fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components (NCBI), at 2,274,322 to 2,275,911 yejF b2181: yejG - hypothetical protein (NCBI), at 2,275,915 to 2,276,259 yejG b2182: bcr - bicyclomycin/multidrug efflux system (NCBI), at 2,276,592 to 2,277,782 bcr Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2273.566 kb on + strand, within yejEat 2273.569 kb on + strand, within yejEat 2273.569 kb on + strand, within yejEat 2273.579 kb on - strand, within yejEat 2273.596 kb on + strand, within yejEat 2273.695 kb on + strand, within yejEat 2273.695 kb on + strand, within yejEat 2273.836 kb on + strand, within yejEat 2273.887 kb on - strand, within yejEat 2273.947 kb on - strand, within yejEat 2274.170 kb on + strand, within yejEat 2274.170 kb on + strand, within yejEat 2274.266 kb on - strandat 2274.294 kb on + strandat 2274.305 kb on + strandat 2274.305 kb on + strandat 2274.340 kb on - strandat 2274.340 kb on - strandat 2274.496 kb on + strand, within yejFat 2274.519 kb on - strand, within yejFat 2274.650 kb on - strand, within yejFat 2274.650 kb on - strand, within yejFat 2274.813 kb on + strand, within yejFat 2274.832 kb on + strand, within yejFat 2274.834 kb on + strand, within yejFat 2274.840 kb on - strand, within yejFat 2275.066 kb on + strand, within yejFat 2275.071 kb on + strand, within yejFat 2275.079 kb on - strand, within yejFat 2275.089 kb on + strand, within yejFat 2275.112 kb on + strand, within yejFat 2275.120 kb on - strand, within yejFat 2275.201 kb on - strand, within yejFat 2275.219 kb on - strand, within yejFat 2275.389 kb on + strand, within yejFat 2275.455 kb on + strand, within yejFat 2275.455 kb on + strand, within yejFat 2275.455 kb on + strand, within yejFat 2275.455 kb on + strand, within yejFat 2275.499 kb on + strand, within yejFat 2275.526 kb on + strand, within yejFat 2275.673 kb on + strand, within yejFat 2275.814 kb on - strandat 2275.816 kb on - strandat 2275.870 kb on + strandat 2275.870 kb on + strandat 2276.009 kb on + strand, within yejGat 2276.027 kb on - strand, within yejGat 2276.032 kb on + strand, within yejGat 2276.032 kb on + strand, within yejGat 2276.032 kb on + strand, within yejGat 2276.032 kb on - strand, within yejGat 2276.078 kb on + strand, within yejGat 2276.099 kb on + strand, within yejGat 2276.108 kb on - strand, within yejGat 2276.245 kb on - strandat 2276.332 kb on + strandat 2276.374 kb on + strandat 2276.406 kb on - strandat 2276.411 kb on - strandat 2276.411 kb on - strandat 2276.429 kb on - strandat 2276.885 kb on - strand, within bcrat 2276.892 kb on - strand, within bcrat 2276.892 kb on - strand, within bcr

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,273,566 + yejE b2179 0.26 +3.2
2,273,569 + yejE b2179 0.27 -1.2
2,273,569 + yejE b2179 0.27 -0.9
2,273,579 - yejE b2179 0.28 -1.7
2,273,596 + yejE b2179 0.29 -0.3
2,273,695 + yejE b2179 0.39 -0.4
2,273,695 + yejE b2179 0.39 +0.6
2,273,836 + yejE b2179 0.53 -1.2
2,273,887 - yejE b2179 0.58 +0.2
2,273,947 - yejE b2179 0.64 -2.2
2,274,170 + yejE b2179 0.85 +0.8
2,274,170 + yejE b2179 0.85 -2.0
2,274,266 - +0.1
2,274,294 + -0.7
2,274,305 + +0.1
2,274,305 + -0.9
2,274,340 - +1.1
2,274,340 - +1.9
2,274,496 + yejF b2180 0.11 +0.3
2,274,519 - yejF b2180 0.12 -2.3
2,274,650 - yejF b2180 0.21 -0.4
2,274,650 - yejF b2180 0.21 -0.6
2,274,813 + yejF b2180 0.31 +0.1
2,274,832 + yejF b2180 0.32 -2.3
2,274,834 + yejF b2180 0.32 -1.7
2,274,840 - yejF b2180 0.33 +2.6
2,275,066 + yejF b2180 0.47 -1.7
2,275,071 + yejF b2180 0.47 -0.3
2,275,079 - yejF b2180 0.48 +0.6
2,275,089 + yejF b2180 0.48 -1.2
2,275,112 + yejF b2180 0.50 +1.7
2,275,120 - yejF b2180 0.50 +1.8
2,275,201 - yejF b2180 0.55 +1.3
2,275,219 - yejF b2180 0.56 -1.4
2,275,389 + yejF b2180 0.67 -1.9
2,275,455 + yejF b2180 0.71 -2.0
2,275,455 + yejF b2180 0.71 -0.9
2,275,455 + yejF b2180 0.71 -0.7
2,275,455 + yejF b2180 0.71 -1.2
2,275,499 + yejF b2180 0.74 +0.7
2,275,526 + yejF b2180 0.76 -2.6
2,275,673 + yejF b2180 0.85 -0.0
2,275,814 - +0.8
2,275,816 - +0.5
2,275,870 + +1.5
2,275,870 + +0.6
2,276,009 + yejG b2181 0.27 -2.9
2,276,027 - yejG b2181 0.32 +0.6
2,276,032 + yejG b2181 0.34 -0.4
2,276,032 + yejG b2181 0.34 -1.2
2,276,032 + yejG b2181 0.34 +0.1
2,276,032 - yejG b2181 0.34 -2.2
2,276,078 + yejG b2181 0.47 -0.1
2,276,099 + yejG b2181 0.53 -1.7
2,276,108 - yejG b2181 0.56 -1.5
2,276,245 - -0.9
2,276,332 + -1.7
2,276,374 + +2.0
2,276,406 - +4.8
2,276,411 - +2.0
2,276,411 - +3.1
2,276,429 - +3.0
2,276,885 - bcr b2182 0.25 -0.2
2,276,892 - bcr b2182 0.25 +1.7
2,276,892 - bcr b2182 0.25 +1.1

Or see this region's nucleotide sequence