Strain Fitness in Escherichia coli BW25113 around b2180
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,273,566 | + | yejE | b2179 | 0.26 | +3.2 |
2,273,569 | + | yejE | b2179 | 0.27 | -1.2 |
2,273,569 | + | yejE | b2179 | 0.27 | -0.9 |
2,273,579 | - | yejE | b2179 | 0.28 | -1.7 |
2,273,596 | + | yejE | b2179 | 0.29 | -0.3 |
2,273,695 | + | yejE | b2179 | 0.39 | -0.4 |
2,273,695 | + | yejE | b2179 | 0.39 | +0.6 |
2,273,836 | + | yejE | b2179 | 0.53 | -1.2 |
2,273,887 | - | yejE | b2179 | 0.58 | +0.2 |
2,273,947 | - | yejE | b2179 | 0.64 | -2.2 |
2,274,170 | + | yejE | b2179 | 0.85 | +0.8 |
2,274,170 | + | yejE | b2179 | 0.85 | -2.0 |
2,274,266 | - | +0.1 | |||
2,274,294 | + | -0.7 | |||
2,274,305 | + | +0.1 | |||
2,274,305 | + | -0.9 | |||
2,274,340 | - | +1.1 | |||
2,274,340 | - | +1.9 | |||
2,274,496 | + | yejF | b2180 | 0.11 | +0.3 |
2,274,519 | - | yejF | b2180 | 0.12 | -2.3 |
2,274,650 | - | yejF | b2180 | 0.21 | -0.4 |
2,274,650 | - | yejF | b2180 | 0.21 | -0.6 |
2,274,813 | + | yejF | b2180 | 0.31 | +0.1 |
2,274,832 | + | yejF | b2180 | 0.32 | -2.3 |
2,274,834 | + | yejF | b2180 | 0.32 | -1.7 |
2,274,840 | - | yejF | b2180 | 0.33 | +2.6 |
2,275,066 | + | yejF | b2180 | 0.47 | -1.7 |
2,275,071 | + | yejF | b2180 | 0.47 | -0.3 |
2,275,079 | - | yejF | b2180 | 0.48 | +0.6 |
2,275,089 | + | yejF | b2180 | 0.48 | -1.2 |
2,275,112 | + | yejF | b2180 | 0.50 | +1.7 |
2,275,120 | - | yejF | b2180 | 0.50 | +1.8 |
2,275,201 | - | yejF | b2180 | 0.55 | +1.3 |
2,275,219 | - | yejF | b2180 | 0.56 | -1.4 |
2,275,389 | + | yejF | b2180 | 0.67 | -1.9 |
2,275,455 | + | yejF | b2180 | 0.71 | -2.0 |
2,275,455 | + | yejF | b2180 | 0.71 | -0.9 |
2,275,455 | + | yejF | b2180 | 0.71 | -0.7 |
2,275,455 | + | yejF | b2180 | 0.71 | -1.2 |
2,275,499 | + | yejF | b2180 | 0.74 | +0.7 |
2,275,526 | + | yejF | b2180 | 0.76 | -2.6 |
2,275,673 | + | yejF | b2180 | 0.85 | -0.0 |
2,275,814 | - | +0.8 | |||
2,275,816 | - | +0.5 | |||
2,275,870 | + | +1.5 | |||
2,275,870 | + | +0.6 | |||
2,276,009 | + | yejG | b2181 | 0.27 | -2.9 |
2,276,027 | - | yejG | b2181 | 0.32 | +0.6 |
2,276,032 | + | yejG | b2181 | 0.34 | -0.4 |
2,276,032 | + | yejG | b2181 | 0.34 | -1.2 |
2,276,032 | + | yejG | b2181 | 0.34 | +0.1 |
2,276,032 | - | yejG | b2181 | 0.34 | -2.2 |
2,276,078 | + | yejG | b2181 | 0.47 | -0.1 |
2,276,099 | + | yejG | b2181 | 0.53 | -1.7 |
2,276,108 | - | yejG | b2181 | 0.56 | -1.5 |
2,276,245 | - | -0.9 | |||
2,276,332 | + | -1.7 | |||
2,276,374 | + | +2.0 | |||
2,276,406 | - | +4.8 | |||
2,276,411 | - | +2.0 | |||
2,276,411 | - | +3.1 | |||
2,276,429 | - | +3.0 | |||
2,276,885 | - | bcr | b2182 | 0.25 | -0.2 |
2,276,892 | - | bcr | b2182 | 0.25 | +1.7 |
2,276,892 | - | bcr | b2182 | 0.25 | +1.1 |
Or see this region's nucleotide sequence