Strain Fitness in Escherichia coli BW25113 around b2131

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyehY and yehZ are separated by 6 nucleotidesyehZ and bglX are separated by 210 nucleotides b2130: yehY - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 2,215,422 to 2,216,579 yehY b2131: yehZ - predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 2,216,586 to 2,217,503 yehZ b2132: bglX - beta-D-glucoside glucohydrolase, periplasmic (NCBI), at 2,217,714 to 2,220,011 bglX Position (kb) 2216 2217 2218Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2215.683 kb on - strand, within yehYat 2215.683 kb on - strand, within yehYat 2215.698 kb on - strand, within yehYat 2215.698 kb on - strand, within yehYat 2215.701 kb on - strand, within yehYat 2215.805 kb on + strand, within yehYat 2215.876 kb on - strand, within yehYat 2215.909 kb on - strand, within yehYat 2215.909 kb on - strand, within yehYat 2215.998 kb on + strand, within yehYat 2216.025 kb on + strand, within yehYat 2216.025 kb on + strand, within yehYat 2216.209 kb on + strand, within yehYat 2216.209 kb on + strand, within yehYat 2216.217 kb on - strand, within yehYat 2216.217 kb on - strand, within yehYat 2216.355 kb on - strand, within yehYat 2216.544 kb on - strandat 2216.627 kb on + strandat 2216.745 kb on - strand, within yehZat 2216.745 kb on - strand, within yehZat 2216.748 kb on - strand, within yehZat 2216.767 kb on - strand, within yehZat 2216.782 kb on + strand, within yehZat 2216.950 kb on - strand, within yehZat 2216.950 kb on - strand, within yehZat 2216.955 kb on + strand, within yehZat 2216.955 kb on + strand, within yehZat 2217.019 kb on + strand, within yehZat 2217.153 kb on - strand, within yehZat 2217.153 kb on - strand, within yehZat 2217.260 kb on + strand, within yehZat 2217.311 kb on - strand, within yehZat 2217.311 kb on - strand, within yehZat 2217.328 kb on + strand, within yehZat 2217.376 kb on + strand, within yehZat 2217.463 kb on + strandat 2217.470 kb on + strandat 2217.560 kb on - strandat 2217.621 kb on - strandat 2217.682 kb on - strandat 2217.769 kb on + strandat 2218.066 kb on + strand, within bglXat 2218.089 kb on + strand, within bglXat 2218.089 kb on + strand, within bglXat 2218.305 kb on - strand, within bglXat 2218.470 kb on + strand, within bglXat 2218.470 kb on + strand, within bglXat 2218.476 kb on - strand, within bglXat 2218.476 kb on - strand, within bglXat 2218.483 kb on - strand, within bglXat 2218.483 kb on - strand, within bglX

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,215,683 - yehY b2130 0.23 +0.5
2,215,683 - yehY b2130 0.23 -1.7
2,215,698 - yehY b2130 0.24 +1.7
2,215,698 - yehY b2130 0.24 +4.6
2,215,701 - yehY b2130 0.24 -0.6
2,215,805 + yehY b2130 0.33 -0.5
2,215,876 - yehY b2130 0.39 -1.9
2,215,909 - yehY b2130 0.42 +0.9
2,215,909 - yehY b2130 0.42 +2.8
2,215,998 + yehY b2130 0.50 +1.1
2,216,025 + yehY b2130 0.52 -1.5
2,216,025 + yehY b2130 0.52 +1.7
2,216,209 + yehY b2130 0.68 -0.9
2,216,209 + yehY b2130 0.68 -2.0
2,216,217 - yehY b2130 0.69 -0.9
2,216,217 - yehY b2130 0.69 +1.4
2,216,355 - yehY b2130 0.81 +0.3
2,216,544 - -0.3
2,216,627 + +0.6
2,216,745 - yehZ b2131 0.17 -2.3
2,216,745 - yehZ b2131 0.17 -2.6
2,216,748 - yehZ b2131 0.18 -0.7
2,216,767 - yehZ b2131 0.20 -2.4
2,216,782 + yehZ b2131 0.21 -1.0
2,216,950 - yehZ b2131 0.40 -1.0
2,216,950 - yehZ b2131 0.40 -2.4
2,216,955 + yehZ b2131 0.40 +0.1
2,216,955 + yehZ b2131 0.40 +0.1
2,217,019 + yehZ b2131 0.47 -2.6
2,217,153 - yehZ b2131 0.62 -0.4
2,217,153 - yehZ b2131 0.62 -1.9
2,217,260 + yehZ b2131 0.73 +0.4
2,217,311 - yehZ b2131 0.79 -0.9
2,217,311 - yehZ b2131 0.79 -0.4
2,217,328 + yehZ b2131 0.81 +1.1
2,217,376 + yehZ b2131 0.86 -0.3
2,217,463 + +0.7
2,217,470 + +0.4
2,217,560 - -1.2
2,217,621 - +0.8
2,217,682 - -1.7
2,217,769 + +0.4
2,218,066 + bglX b2132 0.15 -0.4
2,218,089 + bglX b2132 0.16 -0.1
2,218,089 + bglX b2132 0.16 -1.4
2,218,305 - bglX b2132 0.26 -1.2
2,218,470 + bglX b2132 0.33 -0.3
2,218,470 + bglX b2132 0.33 -1.2
2,218,476 - bglX b2132 0.33 +0.9
2,218,476 - bglX b2132 0.33 +0.1
2,218,483 - bglX b2132 0.33 -2.6
2,218,483 - bglX b2132 0.33 -2.0

Or see this region's nucleotide sequence