Strain Fitness in Escherichia coli BW25113 around b1865
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,945,219 | + | ruvC | b1863 | 0.65 | +0.6 |
1,945,255 | - | ruvC | b1863 | 0.72 | -0.4 |
1,945,260 | - | ruvC | b1863 | 0.73 | +0.1 |
1,945,307 | + | ruvC | b1863 | 0.82 | -1.3 |
1,945,323 | - | ruvC | b1863 | 0.85 | -1.2 |
1,945,396 | - | -0.9 | |||
1,945,455 | + | +1.6 | |||
1,945,524 | - | yebC | b1864 | 0.12 | +1.1 |
1,945,557 | - | yebC | b1864 | 0.16 | +0.2 |
1,945,557 | - | yebC | b1864 | 0.16 | +0.7 |
1,945,623 | - | yebC | b1864 | 0.25 | +1.1 |
1,945,623 | - | yebC | b1864 | 0.25 | -0.9 |
1,945,640 | - | yebC | b1864 | 0.28 | -0.4 |
1,945,640 | - | yebC | b1864 | 0.28 | +1.3 |
1,945,652 | + | yebC | b1864 | 0.29 | -1.4 |
1,945,663 | - | yebC | b1864 | 0.31 | +1.7 |
1,945,726 | - | yebC | b1864 | 0.39 | +0.9 |
1,945,975 | + | yebC | b1864 | 0.73 | +2.2 |
1,945,975 | + | yebC | b1864 | 0.73 | +1.1 |
1,945,997 | + | yebC | b1864 | 0.76 | +1.3 |
1,946,123 | - | +1.1 | |||
1,946,247 | + | +6.4 | |||
1,946,247 | + | +6.1 | |||
1,946,435 | + | nudB | b1865 | 0.51 | +1.1 |
1,946,471 | - | nudB | b1865 | 0.59 | +6.3 |
1,946,471 | - | nudB | b1865 | 0.59 | +6.4 |
1,946,636 | + | +0.4 | |||
1,946,644 | - | +2.9 |
Or see this region's nucleotide sequence