Strain Fitness in Escherichia coli BW25113 around b1816
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,897,151 | - | b1815 | b1815 | 0.44 | -2.2 |
1,897,353 | - | b1815 | b1815 | 0.56 | +2.1 |
1,897,505 | - | b1815 | b1815 | 0.66 | +0.3 |
1,897,505 | - | b1815 | b1815 | 0.66 | -0.8 |
1,897,514 | - | b1815 | b1815 | 0.66 | -1.7 |
1,897,514 | - | b1815 | b1815 | 0.66 | +1.6 |
1,897,543 | - | b1815 | b1815 | 0.68 | -1.9 |
1,897,597 | + | b1815 | b1815 | 0.72 | +1.1 |
1,898,074 | + | -0.1 | |||
1,898,454 | - | yoaE | b1816 | 0.26 | +0.7 |
1,898,667 | + | yoaE | b1816 | 0.39 | -0.3 |
1,898,794 | - | yoaE | b1816 | 0.48 | +4.0 |
1,898,843 | + | yoaE | b1816 | 0.51 | +2.1 |
1,898,864 | + | yoaE | b1816 | 0.52 | -1.7 |
1,898,914 | - | yoaE | b1816 | 0.55 | -0.1 |
1,898,925 | + | yoaE | b1816 | 0.56 | +1.7 |
1,898,932 | - | yoaE | b1816 | 0.56 | -0.5 |
1,898,932 | - | yoaE | b1816 | 0.56 | +0.6 |
1,899,020 | - | yoaE | b1816 | 0.62 | +2.3 |
1,899,020 | - | yoaE | b1816 | 0.62 | +3.1 |
1,899,103 | + | yoaE | b1816 | 0.67 | +2.1 |
1,899,103 | + | yoaE | b1816 | 0.67 | +1.1 |
1,899,429 | + | yoaE | b1816 | 0.88 | -3.2 |
1,899,689 | + | -0.9 | |||
1,899,769 | + | +0.8 | |||
1,899,804 | + | -1.5 | |||
1,899,991 | - | -0.2 | |||
1,900,072 | - | +2.5 | |||
1,900,112 | - | +0.4 | |||
1,900,117 | - | -0.9 | |||
1,900,225 | + | manX | b1817 | 0.16 | +0.5 |
1,900,253 | - | manX | b1817 | 0.19 | -0.6 |
1,900,413 | + | manX | b1817 | 0.35 | -0.9 |
Or see this region's nucleotide sequence