Strain Fitness in Escherichia coli BW25113 around b1782
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,862,801 | + | +2.1 | |||
1,862,801 | + | +1.5 | |||
1,862,851 | - | +2.4 | |||
1,862,851 | - | +0.1 | |||
1,862,985 | - | yeaE | b1781 | 0.21 | +1.2 |
1,863,088 | - | yeaE | b1781 | 0.33 | -0.8 |
1,863,147 | + | yeaE | b1781 | 0.40 | +0.7 |
1,863,391 | - | yeaE | b1781 | 0.68 | +0.9 |
1,863,454 | + | yeaE | b1781 | 0.76 | -0.2 |
1,863,511 | + | yeaE | b1781 | 0.82 | -2.5 |
1,863,597 | - | +0.5 | |||
1,863,603 | - | +2.9 | |||
1,863,609 | - | -1.3 | |||
1,863,609 | - | -0.9 | |||
1,863,821 | - | -0.9 | |||
1,863,845 | - | mipA | b1782 | 0.13 | -1.5 |
1,864,037 | + | mipA | b1782 | 0.38 | -2.8 |
1,864,155 | + | mipA | b1782 | 0.54 | -0.5 |
1,864,155 | + | mipA | b1782 | 0.54 | -2.5 |
1,864,158 | - | mipA | b1782 | 0.55 | -2.1 |
1,864,158 | - | mipA | b1782 | 0.55 | +0.1 |
1,864,234 | - | mipA | b1782 | 0.65 | -0.3 |
1,864,234 | - | mipA | b1782 | 0.65 | -1.9 |
1,864,352 | - | mipA | b1782 | 0.81 | -2.4 |
1,864,398 | + | mipA | b1782 | 0.87 | -2.6 |
1,864,398 | + | mipA | b1782 | 0.87 | -2.7 |
1,864,659 | + | -1.5 | |||
1,864,659 | + | -2.7 | |||
1,864,832 | - | +0.3 | |||
1,865,039 | - | +0.2 | |||
1,865,039 | - | -2.5 | |||
1,865,044 | - | -0.8 | |||
1,865,184 | + | yeaG | b1783 | 0.13 | -2.3 |
1,865,184 | + | yeaG | b1783 | 0.13 | -2.3 |
1,865,225 | - | yeaG | b1783 | 0.15 | -2.6 |
Or see this region's nucleotide sequence