Strain Fitness in Escherichia coli BW25113 around b1782

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaD and yeaE are separated by 47 nucleotidesyeaE and mipA are separated by 89 nucleotidesmipA and yeaG are separated by 435 nucleotides b1780: yeaD - orf, hypothetical protein (VIMSS), at 1,861,874 to 1,862,758 yeaD b1781: yeaE - predicted oxidoreductase (NCBI), at 1,862,806 to 1,863,660 yeaE b1782: mipA - scaffolding protein for murein synthesizing machinery (NCBI), at 1,863,750 to 1,864,496 mipA b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,864,932 to 1,866,866 yeaG Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1862.801 kb on + strandat 1862.801 kb on + strandat 1862.851 kb on - strandat 1862.851 kb on - strandat 1862.985 kb on - strand, within yeaEat 1863.088 kb on - strand, within yeaEat 1863.147 kb on + strand, within yeaEat 1863.391 kb on - strand, within yeaEat 1863.454 kb on + strand, within yeaEat 1863.511 kb on + strand, within yeaEat 1863.597 kb on - strandat 1863.603 kb on - strandat 1863.609 kb on - strandat 1863.609 kb on - strandat 1863.821 kb on - strandat 1863.845 kb on - strand, within mipAat 1864.037 kb on + strand, within mipAat 1864.155 kb on + strand, within mipAat 1864.155 kb on + strand, within mipAat 1864.158 kb on - strand, within mipAat 1864.158 kb on - strand, within mipAat 1864.234 kb on - strand, within mipAat 1864.234 kb on - strand, within mipAat 1864.352 kb on - strand, within mipAat 1864.398 kb on + strand, within mipAat 1864.398 kb on + strand, within mipAat 1864.659 kb on + strandat 1864.659 kb on + strandat 1864.832 kb on - strandat 1865.039 kb on - strandat 1865.039 kb on - strandat 1865.044 kb on - strandat 1865.184 kb on + strand, within yeaGat 1865.184 kb on + strand, within yeaGat 1865.225 kb on - strand, within yeaG

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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1,862,801 + +2.1
1,862,801 + +1.5
1,862,851 - +2.4
1,862,851 - +0.1
1,862,985 - yeaE b1781 0.21 +1.2
1,863,088 - yeaE b1781 0.33 -0.8
1,863,147 + yeaE b1781 0.40 +0.7
1,863,391 - yeaE b1781 0.68 +0.9
1,863,454 + yeaE b1781 0.76 -0.2
1,863,511 + yeaE b1781 0.82 -2.5
1,863,597 - +0.5
1,863,603 - +2.9
1,863,609 - -1.3
1,863,609 - -0.9
1,863,821 - -0.9
1,863,845 - mipA b1782 0.13 -1.5
1,864,037 + mipA b1782 0.38 -2.8
1,864,155 + mipA b1782 0.54 -0.5
1,864,155 + mipA b1782 0.54 -2.5
1,864,158 - mipA b1782 0.55 -2.1
1,864,158 - mipA b1782 0.55 +0.1
1,864,234 - mipA b1782 0.65 -0.3
1,864,234 - mipA b1782 0.65 -1.9
1,864,352 - mipA b1782 0.81 -2.4
1,864,398 + mipA b1782 0.87 -2.6
1,864,398 + mipA b1782 0.87 -2.7
1,864,659 + -1.5
1,864,659 + -2.7
1,864,832 - +0.3
1,865,039 - +0.2
1,865,039 - -2.5
1,865,044 - -0.8
1,865,184 + yeaG b1783 0.13 -2.3
1,865,184 + yeaG b1783 0.13 -2.3
1,865,225 - yeaG b1783 0.15 -2.6

Or see this region's nucleotide sequence