Strain Fitness in Escherichia coli BW25113 around b1624
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,700,313 | - | -1.0 | |||
1,700,327 | + | -1.4 | |||
1,700,572 | - | add | b1623 | 0.31 | -2.2 |
1,700,727 | + | add | b1623 | 0.47 | -1.0 |
1,700,929 | - | add | b1623 | 0.67 | +1.6 |
1,701,020 | + | add | b1623 | 0.76 | -0.0 |
1,701,061 | - | add | b1623 | 0.80 | -3.0 |
1,701,086 | - | add | b1623 | 0.83 | -1.6 |
1,701,086 | - | add | b1623 | 0.83 | +0.7 |
1,701,146 | + | add | b1623 | 0.89 | -0.1 |
1,701,449 | + | b1624 | b1624 | 0.15 | +2.1 |
1,701,449 | + | b1624 | b1624 | 0.15 | -0.0 |
1,701,496 | - | b1624 | b1624 | 0.20 | -0.0 |
1,701,496 | - | b1624 | b1624 | 0.20 | -2.2 |
1,701,536 | + | b1624 | b1624 | 0.23 | +0.5 |
1,701,612 | - | b1624 | b1624 | 0.31 | +0.3 |
1,701,697 | + | b1624 | b1624 | 0.39 | -0.2 |
1,701,798 | + | b1624 | b1624 | 0.49 | -0.4 |
1,701,798 | + | b1624 | b1624 | 0.49 | +2.4 |
1,701,813 | - | b1624 | b1624 | 0.50 | -1.0 |
1,701,813 | - | b1624 | b1624 | 0.50 | -1.0 |
1,701,886 | - | b1624 | b1624 | 0.57 | -0.6 |
1,701,923 | + | b1624 | b1624 | 0.61 | -0.2 |
1,701,972 | - | b1624 | b1624 | 0.65 | -1.4 |
1,701,988 | + | b1624 | b1624 | 0.67 | +0.6 |
1,701,988 | + | b1624 | b1624 | 0.67 | -0.6 |
1,702,175 | - | b1624 | b1624 | 0.85 | +0.2 |
1,702,296 | - | +0.4 | |||
1,702,375 | + | -1.4 | |||
1,702,382 | - | +0.2 | |||
1,702,402 | - | -2.7 | |||
1,702,402 | - | -2.6 | |||
1,702,418 | - | +1.3 | |||
1,702,423 | + | -0.3 | |||
1,702,425 | + | -2.0 | |||
1,702,425 | + | +2.5 | |||
1,702,541 | - | +0.2 | |||
1,702,546 | - | -2.0 | |||
1,702,553 | + | +1.0 | |||
1,702,553 | + | +1.0 | |||
1,702,560 | - | -0.5 | |||
1,702,565 | - | -1.4 | |||
1,702,569 | + | -0.6 | |||
1,702,569 | - | +0.4 | |||
1,702,569 | - | -0.0 | |||
1,702,572 | + | -1.3 | |||
1,702,626 | + | blr | b4409 | 0.40 | -0.3 |
1,702,634 | - | blr | b4409 | 0.47 | -0.7 |
1,702,638 | - | blr | b4409 | 0.50 | +0.8 |
1,702,648 | + | blr | b4409 | 0.58 | -0.8 |
1,702,651 | - | blr | b4409 | 0.60 | +0.1 |
1,702,657 | + | blr | b4409 | 0.65 | -1.8 |
1,702,658 | - | blr | b4409 | 0.66 | +1.4 |
1,702,661 | + | blr | b4409 | 0.68 | +1.9 |
1,702,666 | + | blr | b4409 | 0.72 | -2.4 |
1,702,671 | + | blr | b4409 | 0.76 | +0.2 |
1,702,671 | + | blr | b4409 | 0.76 | -1.0 |
1,702,673 | + | blr | b4409 | 0.78 | +0.5 |
1,702,679 | - | blr | b4409 | 0.83 | -0.6 |
1,702,694 | + | -0.0 | |||
1,702,694 | - | -1.5 | |||
1,702,715 | + | +0.3 | |||
1,702,725 | + | +0.4 | |||
1,702,725 | + | -0.3 | |||
1,702,725 | + | +0.0 | |||
1,702,812 | + | +1.4 | |||
1,702,812 | + | +0.5 | |||
1,702,821 | + | -0.2 | |||
1,702,979 | + | -1.5 | |||
1,702,984 | + | -1.4 | |||
1,702,984 | + | -0.6 | |||
1,702,987 | - | -1.6 | |||
1,702,987 | - | -0.3 | |||
1,702,987 | - | +0.4 | |||
1,702,990 | - | -1.0 | |||
1,702,992 | - | -1.0 | |||
1,703,033 | - | ydgT | b1625 | 0.28 | +1.0 |
1,703,052 | + | ydgT | b1625 | 0.37 | -0.0 |
1,703,054 | - | ydgT | b1625 | 0.38 | +0.3 |
1,703,054 | - | ydgT | b1625 | 0.38 | -0.0 |
1,703,055 | + | ydgT | b1625 | 0.38 | +1.4 |
1,703,070 | + | ydgT | b1625 | 0.45 | +1.5 |
1,703,070 | + | ydgT | b1625 | 0.45 | +3.2 |
1,703,070 | + | ydgT | b1625 | 0.45 | -2.5 |
1,703,070 | + | ydgT | b1625 | 0.45 | +1.7 |
1,703,070 | + | ydgT | b1625 | 0.45 | +1.0 |
1,703,078 | - | ydgT | b1625 | 0.49 | -0.6 |
1,703,078 | - | ydgT | b1625 | 0.49 | -1.6 |
1,703,081 | + | ydgT | b1625 | 0.50 | +0.5 |
1,703,084 | + | ydgT | b1625 | 0.51 | +2.0 |
1,703,089 | + | ydgT | b1625 | 0.54 | +2.2 |
1,703,092 | - | ydgT | b1625 | 0.55 | -0.0 |
1,703,102 | - | ydgT | b1625 | 0.60 | +2.5 |
1,703,105 | - | ydgT | b1625 | 0.61 | +1.3 |
1,703,109 | + | ydgT | b1625 | 0.63 | +2.5 |
1,703,109 | + | ydgT | b1625 | 0.63 | -1.0 |
1,703,142 | - | ydgT | b1625 | 0.78 | +4.0 |
1,703,153 | - | ydgT | b1625 | 0.83 | -0.7 |
1,703,178 | + | +1.7 | |||
1,703,210 | - | -1.2 | |||
1,703,263 | - | -0.6 | |||
1,703,268 | - | -0.0 | |||
1,703,276 | + | -2.1 | |||
1,703,278 | - | -2.4 | |||
1,703,296 | + | -1.6 | |||
1,703,296 | + | -1.6 |
Or see this region's nucleotide sequence