Strain Fitness in Escherichia coli BW25113 around b1497

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddA and b1497 are separated by 290 nucleotidesb1497 and b1498 are separated by 51 nucleotides b1496: yddA - fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 1,575,681 to 1,577,366 yddA b1497: b1497 - putative enzyme (VIMSS), at 1,577,657 to 1,578,814 b1497 b1498: b1498 - putative sulfatase (VIMSS), at 1,578,866 to 1,580,548 b1498 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1576.733 kb on + strand, within yddAat 1576.733 kb on + strand, within yddAat 1576.735 kb on - strand, within yddAat 1576.744 kb on + strand, within yddAat 1576.776 kb on + strand, within yddAat 1576.777 kb on + strand, within yddAat 1576.777 kb on + strand, within yddAat 1576.785 kb on - strand, within yddAat 1576.791 kb on - strand, within yddAat 1576.791 kb on - strand, within yddAat 1576.814 kb on + strand, within yddAat 1576.822 kb on + strand, within yddAat 1576.832 kb on - strand, within yddAat 1576.834 kb on + strand, within yddAat 1576.879 kb on - strand, within yddAat 1576.879 kb on - strand, within yddAat 1576.990 kb on - strand, within yddAat 1576.992 kb on - strand, within yddAat 1577.116 kb on + strand, within yddAat 1577.126 kb on + strand, within yddAat 1577.131 kb on + strand, within yddAat 1577.131 kb on + strand, within yddAat 1577.150 kb on + strand, within yddAat 1577.495 kb on + strandat 1577.520 kb on + strandat 1577.531 kb on + strandat 1577.590 kb on + strandat 1577.606 kb on + strandat 1577.606 kb on + strandat 1577.693 kb on - strandat 1578.024 kb on - strand, within b1497at 1578.448 kb on - strand, within b1497at 1578.457 kb on - strand, within b1497at 1578.503 kb on + strand, within b1497at 1578.625 kb on - strand, within b1497at 1578.702 kb on - strandat 1578.801 kb on + strandat 1578.801 kb on + strandat 1578.806 kb on + strandat 1578.822 kb on - strandat 1578.961 kb on - strandat 1578.973 kb on - strandat 1578.981 kb on - strandat 1579.014 kb on - strandat 1579.049 kb on - strand, within b1498at 1579.049 kb on - strand, within b1498at 1579.060 kb on + strand, within b1498at 1579.063 kb on - strand, within b1498at 1579.063 kb on - strand, within b1498at 1579.123 kb on + strand, within b1498at 1579.125 kb on + strand, within b1498at 1579.133 kb on - strand, within b1498at 1579.133 kb on - strand, within b1498at 1579.142 kb on + strand, within b1498at 1579.143 kb on - strand, within b1498at 1579.154 kb on - strand, within b1498at 1579.154 kb on - strand, within b1498at 1579.156 kb on - strand, within b1498at 1579.226 kb on - strand, within b1498at 1579.270 kb on - strand, within b1498at 1579.270 kb on - strand, within b1498at 1579.275 kb on + strand, within b1498at 1579.280 kb on + strand, within b1498at 1579.301 kb on - strand, within b1498at 1579.335 kb on + strand, within b1498at 1579.456 kb on - strand, within b1498at 1579.457 kb on + strand, within b1498at 1579.457 kb on + strand, within b1498at 1579.478 kb on + strand, within b1498at 1579.486 kb on + strand, within b1498at 1579.486 kb on + strand, within b1498at 1579.496 kb on + strand, within b1498at 1579.539 kb on + strand, within b1498at 1579.577 kb on + strand, within b1498at 1579.669 kb on + strand, within b1498at 1579.669 kb on + strand, within b1498at 1579.701 kb on + strand, within b1498at 1579.718 kb on - strand, within b1498at 1579.737 kb on + strand, within b1498at 1579.747 kb on + strand, within b1498at 1579.755 kb on - strand, within b1498at 1579.770 kb on + strand, within b1498

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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1,576,733 + yddA b1496 0.62 -2.2
1,576,733 + yddA b1496 0.62 -1.4
1,576,735 - yddA b1496 0.63 +1.8
1,576,744 + yddA b1496 0.63 -1.2
1,576,776 + yddA b1496 0.65 +0.0
1,576,777 + yddA b1496 0.65 +0.7
1,576,777 + yddA b1496 0.65 -1.4
1,576,785 - yddA b1496 0.65 +1.0
1,576,791 - yddA b1496 0.66 -1.6
1,576,791 - yddA b1496 0.66 -0.6
1,576,814 + yddA b1496 0.67 -0.1
1,576,822 + yddA b1496 0.68 +1.4
1,576,832 - yddA b1496 0.68 -1.0
1,576,834 + yddA b1496 0.68 +0.7
1,576,879 - yddA b1496 0.71 -1.3
1,576,879 - yddA b1496 0.71 -2.4
1,576,990 - yddA b1496 0.78 -0.5
1,576,992 - yddA b1496 0.78 +1.5
1,577,116 + yddA b1496 0.85 +3.0
1,577,126 + yddA b1496 0.86 -0.4
1,577,131 + yddA b1496 0.86 -0.6
1,577,131 + yddA b1496 0.86 +0.4
1,577,150 + yddA b1496 0.87 +3.2
1,577,495 + -1.0
1,577,520 + -0.7
1,577,531 + -1.0
1,577,590 + +0.1
1,577,606 + -1.3
1,577,606 + +0.0
1,577,693 - -0.0
1,578,024 - b1497 b1497 0.32 -3.4
1,578,448 - b1497 b1497 0.68 -2.0
1,578,457 - b1497 b1497 0.69 -2.0
1,578,503 + b1497 b1497 0.73 -2.0
1,578,625 - b1497 b1497 0.84 +2.4
1,578,702 - -1.3
1,578,801 + -2.0
1,578,801 + -0.5
1,578,806 + -0.6
1,578,822 - +1.7
1,578,961 - +0.6
1,578,973 - -0.9
1,578,981 - +0.4
1,579,014 - -0.2
1,579,049 - b1498 b1498 0.11 -0.2
1,579,049 - b1498 b1498 0.11 -0.6
1,579,060 + b1498 b1498 0.12 -1.2
1,579,063 - b1498 b1498 0.12 +0.4
1,579,063 - b1498 b1498 0.12 -2.2
1,579,123 + b1498 b1498 0.15 -0.3
1,579,125 + b1498 b1498 0.15 +0.7
1,579,133 - b1498 b1498 0.16 +1.2
1,579,133 - b1498 b1498 0.16 +1.0
1,579,142 + b1498 b1498 0.16 -0.0
1,579,143 - b1498 b1498 0.16 -0.0
1,579,154 - b1498 b1498 0.17 +0.6
1,579,154 - b1498 b1498 0.17 -0.0
1,579,156 - b1498 b1498 0.17 +2.3
1,579,226 - b1498 b1498 0.21 +0.5
1,579,270 - b1498 b1498 0.24 -1.0
1,579,270 - b1498 b1498 0.24 -1.0
1,579,275 + b1498 b1498 0.24 +1.2
1,579,280 + b1498 b1498 0.25 -2.8
1,579,301 - b1498 b1498 0.26 +1.5
1,579,335 + b1498 b1498 0.28 -1.0
1,579,456 - b1498 b1498 0.35 -2.0
1,579,457 + b1498 b1498 0.35 -1.6
1,579,457 + b1498 b1498 0.35 +0.8
1,579,478 + b1498 b1498 0.36 -2.2
1,579,486 + b1498 b1498 0.37 +0.5
1,579,486 + b1498 b1498 0.37 -2.5
1,579,496 + b1498 b1498 0.37 -2.6
1,579,539 + b1498 b1498 0.40 -2.0
1,579,577 + b1498 b1498 0.42 -2.2
1,579,669 + b1498 b1498 0.48 -2.6
1,579,669 + b1498 b1498 0.48 -2.8
1,579,701 + b1498 b1498 0.50 -1.0
1,579,718 - b1498 b1498 0.51 +0.6
1,579,737 + b1498 b1498 0.52 -2.5
1,579,747 + b1498 b1498 0.52 +1.7
1,579,755 - b1498 b1498 0.53 -1.7
1,579,770 + b1498 b1498 0.54 -0.6

Or see this region's nucleotide sequence