Strain Fitness in Escherichia coli BW25113 around b1497
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,576,733 | + | yddA | b1496 | 0.62 | -2.2 |
1,576,733 | + | yddA | b1496 | 0.62 | -1.4 |
1,576,735 | - | yddA | b1496 | 0.63 | +1.8 |
1,576,744 | + | yddA | b1496 | 0.63 | -1.2 |
1,576,776 | + | yddA | b1496 | 0.65 | +0.0 |
1,576,777 | + | yddA | b1496 | 0.65 | +0.7 |
1,576,777 | + | yddA | b1496 | 0.65 | -1.4 |
1,576,785 | - | yddA | b1496 | 0.65 | +1.0 |
1,576,791 | - | yddA | b1496 | 0.66 | -1.6 |
1,576,791 | - | yddA | b1496 | 0.66 | -0.6 |
1,576,814 | + | yddA | b1496 | 0.67 | -0.1 |
1,576,822 | + | yddA | b1496 | 0.68 | +1.4 |
1,576,832 | - | yddA | b1496 | 0.68 | -1.0 |
1,576,834 | + | yddA | b1496 | 0.68 | +0.7 |
1,576,879 | - | yddA | b1496 | 0.71 | -1.3 |
1,576,879 | - | yddA | b1496 | 0.71 | -2.4 |
1,576,990 | - | yddA | b1496 | 0.78 | -0.5 |
1,576,992 | - | yddA | b1496 | 0.78 | +1.5 |
1,577,116 | + | yddA | b1496 | 0.85 | +3.0 |
1,577,126 | + | yddA | b1496 | 0.86 | -0.4 |
1,577,131 | + | yddA | b1496 | 0.86 | -0.6 |
1,577,131 | + | yddA | b1496 | 0.86 | +0.4 |
1,577,150 | + | yddA | b1496 | 0.87 | +3.2 |
1,577,495 | + | -1.0 | |||
1,577,520 | + | -0.7 | |||
1,577,531 | + | -1.0 | |||
1,577,590 | + | +0.1 | |||
1,577,606 | + | -1.3 | |||
1,577,606 | + | +0.0 | |||
1,577,693 | - | -0.0 | |||
1,578,024 | - | b1497 | b1497 | 0.32 | -3.4 |
1,578,448 | - | b1497 | b1497 | 0.68 | -2.0 |
1,578,457 | - | b1497 | b1497 | 0.69 | -2.0 |
1,578,503 | + | b1497 | b1497 | 0.73 | -2.0 |
1,578,625 | - | b1497 | b1497 | 0.84 | +2.4 |
1,578,702 | - | -1.3 | |||
1,578,801 | + | -2.0 | |||
1,578,801 | + | -0.5 | |||
1,578,806 | + | -0.6 | |||
1,578,822 | - | +1.7 | |||
1,578,961 | - | +0.6 | |||
1,578,973 | - | -0.9 | |||
1,578,981 | - | +0.4 | |||
1,579,014 | - | -0.2 | |||
1,579,049 | - | b1498 | b1498 | 0.11 | -0.2 |
1,579,049 | - | b1498 | b1498 | 0.11 | -0.6 |
1,579,060 | + | b1498 | b1498 | 0.12 | -1.2 |
1,579,063 | - | b1498 | b1498 | 0.12 | +0.4 |
1,579,063 | - | b1498 | b1498 | 0.12 | -2.2 |
1,579,123 | + | b1498 | b1498 | 0.15 | -0.3 |
1,579,125 | + | b1498 | b1498 | 0.15 | +0.7 |
1,579,133 | - | b1498 | b1498 | 0.16 | +1.2 |
1,579,133 | - | b1498 | b1498 | 0.16 | +1.0 |
1,579,142 | + | b1498 | b1498 | 0.16 | -0.0 |
1,579,143 | - | b1498 | b1498 | 0.16 | -0.0 |
1,579,154 | - | b1498 | b1498 | 0.17 | +0.6 |
1,579,154 | - | b1498 | b1498 | 0.17 | -0.0 |
1,579,156 | - | b1498 | b1498 | 0.17 | +2.3 |
1,579,226 | - | b1498 | b1498 | 0.21 | +0.5 |
1,579,270 | - | b1498 | b1498 | 0.24 | -1.0 |
1,579,270 | - | b1498 | b1498 | 0.24 | -1.0 |
1,579,275 | + | b1498 | b1498 | 0.24 | +1.2 |
1,579,280 | + | b1498 | b1498 | 0.25 | -2.8 |
1,579,301 | - | b1498 | b1498 | 0.26 | +1.5 |
1,579,335 | + | b1498 | b1498 | 0.28 | -1.0 |
1,579,456 | - | b1498 | b1498 | 0.35 | -2.0 |
1,579,457 | + | b1498 | b1498 | 0.35 | -1.6 |
1,579,457 | + | b1498 | b1498 | 0.35 | +0.8 |
1,579,478 | + | b1498 | b1498 | 0.36 | -2.2 |
1,579,486 | + | b1498 | b1498 | 0.37 | +0.5 |
1,579,486 | + | b1498 | b1498 | 0.37 | -2.5 |
1,579,496 | + | b1498 | b1498 | 0.37 | -2.6 |
1,579,539 | + | b1498 | b1498 | 0.40 | -2.0 |
1,579,577 | + | b1498 | b1498 | 0.42 | -2.2 |
1,579,669 | + | b1498 | b1498 | 0.48 | -2.6 |
1,579,669 | + | b1498 | b1498 | 0.48 | -2.8 |
1,579,701 | + | b1498 | b1498 | 0.50 | -1.0 |
1,579,718 | - | b1498 | b1498 | 0.51 | +0.6 |
1,579,737 | + | b1498 | b1498 | 0.52 | -2.5 |
1,579,747 | + | b1498 | b1498 | 0.52 | +1.7 |
1,579,755 | - | b1498 | b1498 | 0.53 | -1.7 |
1,579,770 | + | b1498 | b1498 | 0.54 | -0.6 |
Or see this region's nucleotide sequence