Strain Fitness in Escherichia coli BW25113 around b1098

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyceG and tmk overlap by 11 nucleotidestmk and holB overlap by 4 nucleotides b1097: yceG - predicted aminodeoxychorismate lyase (NCBI), at 1,153,335 to 1,154,357 yceG b1098: tmk - thymidylate kinase (NCBI), at 1,154,347 to 1,154,988 tmk b1099: holB - DNA polymerase III subunit delta' (NCBI), at 1,154,985 to 1,155,989 holB Position (kb) 1154 1155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1153.412 kb on + strandat 1153.412 kb on + strandat 1153.585 kb on - strand, within yceGat 1153.597 kb on + strand, within yceGat 1153.603 kb on - strand, within yceGat 1153.609 kb on + strand, within yceGat 1153.656 kb on + strand, within yceGat 1153.697 kb on - strand, within yceGat 1153.802 kb on + strand, within yceGat 1153.907 kb on + strand, within yceGat 1153.907 kb on + strand, within yceGat 1153.934 kb on + strand, within yceGat 1154.104 kb on - strand, within yceGat 1154.150 kb on + strand, within yceGat 1154.150 kb on + strand, within yceGat 1154.152 kb on - strand, within yceGat 1154.152 kb on - strand, within yceGat 1154.158 kb on - strand, within yceGat 1154.158 kb on - strand, within yceGat 1154.160 kb on - strand, within yceGat 1154.280 kb on - strandat 1154.323 kb on + strandat 1154.323 kb on + strandat 1155.056 kb on + strandat 1155.960 kb on + strandat 1155.960 kb on + strandat 1155.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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1,153,412 + -2.9
1,153,412 + -0.7
1,153,585 - yceG b1097 0.24 +1.2
1,153,597 + yceG b1097 0.26 -0.3
1,153,603 - yceG b1097 0.26 -1.4
1,153,609 + yceG b1097 0.27 -1.6
1,153,656 + yceG b1097 0.31 +0.2
1,153,697 - yceG b1097 0.35 -2.6
1,153,802 + yceG b1097 0.46 +1.0
1,153,907 + yceG b1097 0.56 -1.6
1,153,907 + yceG b1097 0.56 +1.5
1,153,934 + yceG b1097 0.59 -1.8
1,154,104 - yceG b1097 0.75 -0.5
1,154,150 + yceG b1097 0.80 -0.0
1,154,150 + yceG b1097 0.80 -0.9
1,154,152 - yceG b1097 0.80 -0.6
1,154,152 - yceG b1097 0.80 +0.2
1,154,158 - yceG b1097 0.80 +0.2
1,154,158 - yceG b1097 0.80 +3.5
1,154,160 - yceG b1097 0.81 +3.1
1,154,280 - -1.4
1,154,323 + +2.5
1,154,323 + -2.3
1,155,056 + +1.3
1,155,960 + +0.0
1,155,960 + -0.6
1,155,966 + +0.4

Or see this region's nucleotide sequence