Strain Fitness in Escherichia coli BW25113 around b1086
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,143,725 | - | +0.0 | |||
1,143,731 | - | +4.0 | |||
1,143,821 | - | b1085 | b1085 | 0.30 | +1.4 |
1,143,969 | - | b1085 | b1085 | 0.76 | +0.8 |
1,143,969 | - | b1085 | b1085 | 0.76 | +1.7 |
1,144,032 | - | +2.0 | |||
1,144,039 | + | -1.1 | |||
1,144,083 | + | -0.8 | |||
1,144,109 | - | +1.9 | |||
1,144,145 | - | +3.0 | |||
1,144,295 | + | rluC | b1086 | 0.14 | +2.0 |
1,144,438 | - | rluC | b1086 | 0.29 | +2.0 |
1,144,509 | - | rluC | b1086 | 0.36 | -1.4 |
1,144,575 | - | rluC | b1086 | 0.43 | +2.5 |
1,144,592 | + | rluC | b1086 | 0.45 | +1.0 |
1,144,610 | - | rluC | b1086 | 0.47 | +0.2 |
1,144,655 | + | rluC | b1086 | 0.51 | +2.5 |
1,144,655 | + | rluC | b1086 | 0.51 | -1.6 |
1,144,699 | + | rluC | b1086 | 0.56 | -1.4 |
1,144,699 | + | rluC | b1086 | 0.56 | -0.6 |
1,144,867 | + | rluC | b1086 | 0.73 | -0.4 |
1,144,867 | + | rluC | b1086 | 0.73 | +4.4 |
1,144,899 | + | rluC | b1086 | 0.77 | -0.4 |
1,144,988 | + | rluC | b1086 | 0.86 | +1.0 |
1,144,988 | + | rluC | b1086 | 0.86 | +2.4 |
1,144,998 | + | rluC | b1086 | 0.87 | -1.4 |
1,144,998 | + | rluC | b1086 | 0.87 | +2.4 |
1,145,011 | - | rluC | b1086 | 0.88 | +2.7 |
1,145,011 | - | rluC | b1086 | 0.88 | +0.2 |
1,145,035 | + | +1.6 | |||
1,145,058 | - | -2.1 | |||
1,145,145 | - | +0.1 | |||
1,145,279 | - | +0.9 | |||
1,145,381 | + | yceF | b1087 | 0.25 | +1.0 |
1,145,381 | + | yceF | b1087 | 0.25 | -0.6 |
1,145,381 | + | yceF | b1087 | 0.25 | +0.3 |
1,145,381 | + | yceF | b1087 | 0.25 | -2.0 |
1,145,389 | - | yceF | b1087 | 0.26 | +2.8 |
1,145,389 | - | yceF | b1087 | 0.26 | +1.2 |
1,145,389 | - | yceF | b1087 | 0.26 | -0.4 |
1,145,395 | + | yceF | b1087 | 0.28 | +0.9 |
1,145,511 | - | yceF | b1087 | 0.47 | +1.8 |
1,145,516 | - | yceF | b1087 | 0.48 | +1.2 |
1,145,516 | - | yceF | b1087 | 0.48 | +0.8 |
1,145,576 | - | yceF | b1087 | 0.58 | +1.0 |
1,145,610 | - | yceF | b1087 | 0.64 | +2.8 |
1,145,614 | - | yceF | b1087 | 0.65 | -0.3 |
1,145,673 | - | yceF | b1087 | 0.75 | +1.2 |
1,145,724 | - | yceF | b1087 | 0.84 | +2.4 |
1,145,734 | - | yceF | b1087 | 0.85 | -0.6 |
1,145,734 | - | yceF | b1087 | 0.85 | -0.8 |
1,145,841 | + | sraB | b4418 | 0.17 | +2.4 |
1,145,847 | - | sraB | b4418 | 0.21 | -0.4 |
1,146,042 | + | +2.6 | |||
1,146,052 | + | +3.2 | |||
1,146,096 | + | yceD | b1088 | 0.15 | +2.2 |
1,146,096 | + | yceD | b1088 | 0.15 | -0.4 |
1,146,117 | + | yceD | b1088 | 0.19 | +2.4 |
Or see this region's nucleotide sequence