Strain Fitness in Escherichia coli BW25113 around b0910

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntycaL and cmk are separated by 172 nucleotidescmk and rpsA are separated by 110 nucleotides b0909: ycaL - putative heat shock protein (VIMSS), at 959,487 to 960,251 ycaL b0910: cmk - cytidylate kinase (NCBI), at 960,424 to 961,107 cmk b0911: rpsA - 30S ribosomal protein S1 (NCBI), at 961,218 to 962,891 rpsA Position (kb) 960 961 962Strain fitness (log2 ratio) -2 -1 0 1 2at 959.529 kb on - strandat 959.542 kb on + strandat 959.551 kb on - strandat 959.551 kb on - strandat 959.560 kb on + strandat 959.613 kb on + strand, within ycaLat 959.621 kb on - strand, within ycaLat 959.621 kb on - strand, within ycaLat 959.629 kb on + strand, within ycaLat 959.661 kb on + strand, within ycaLat 959.792 kb on + strand, within ycaLat 959.800 kb on - strand, within ycaLat 959.911 kb on + strand, within ycaLat 960.118 kb on - strand, within ycaLat 960.152 kb on - strand, within ycaLat 960.170 kb on + strand, within ycaLat 960.197 kb on + strandat 960.200 kb on - strandat 960.223 kb on + strandat 960.312 kb on + strandat 960.312 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
959,529 - +0.5
959,542 + +0.5
959,551 - +0.3
959,551 - +1.9
959,560 + -1.5
959,613 + ycaL b0909 0.16 -0.3
959,621 - ycaL b0909 0.18 +1.7
959,621 - ycaL b0909 0.18 +1.3
959,629 + ycaL b0909 0.19 +1.7
959,661 + ycaL b0909 0.23 +2.1
959,792 + ycaL b0909 0.40 +1.6
959,800 - ycaL b0909 0.41 +2.2
959,911 + ycaL b0909 0.55 -0.3
960,118 - ycaL b0909 0.82 +0.5
960,152 - ycaL b0909 0.87 -0.8
960,170 + ycaL b0909 0.89 +0.1
960,197 + +0.9
960,200 - +1.1
960,223 + -2.1
960,312 + +0.7
960,312 + +0.7

Or see this region's nucleotide sequence