Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjH and b0844 are separated by 85 nucleotides b0844 and ybjJ overlap by 1 nucleotides ybjJ and ybjK are separated by 83 nucleotides ybjK and rybB are separated by 16 nucleotides rybB and ybjL are separated by 79 nucleotides
b0843: ybjH - hypothetical protein (NCBI), at 884,169 to 884,453
ybjH
b0844: b0844 - orf, hypothetical protein (VIMSS), at 884,539 to 885,354
b0844
b0845: ybjJ - predicted transporter (NCBI), at 885,354 to 886,562
ybjJ
b0846: ybjK - predicted DNA-binding transcriptional regulator (NCBI), at 886,646 to 887,182
ybjK
b4417: rybB - unknown RNA (NCBI), at 887,199 to 887,277
rybB
b0847: ybjL - hypothetical protein (NCBI), at 887,357 to 889,042
ybjL
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 884.355 kb on + strand, within ybjH at 884.355 kb on + strand, within ybjH at 884.502 kb on + strand at 884.523 kb on - strand at 884.553 kb on - strand at 884.594 kb on + strand at 884.613 kb on - strand at 884.613 kb on - strand at 884.674 kb on + strand, within b0844 at 884.692 kb on + strand, within b0844 at 884.713 kb on + strand, within b0844 at 884.789 kb on - strand, within b0844 at 884.807 kb on + strand, within b0844 at 884.815 kb on - strand, within b0844 at 884.833 kb on + strand, within b0844 at 884.835 kb on + strand, within b0844 at 884.956 kb on - strand, within b0844 at 884.956 kb on - strand, within b0844 at 885.073 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.105 kb on - strand, within b0844 at 885.133 kb on + strand, within b0844 at 885.226 kb on + strand, within b0844 at 885.231 kb on + strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.280 kb on - strand at 885.280 kb on - strand at 885.296 kb on - strand at 885.320 kb on - strand at 885.350 kb on - strand at 885.471 kb on - strand at 885.494 kb on - strand, within ybjJ at 885.533 kb on + strand, within ybjJ at 885.533 kb on + strand, within ybjJ at 885.551 kb on - strand, within ybjJ at 885.626 kb on - strand, within ybjJ at 885.628 kb on + strand, within ybjJ at 885.674 kb on + strand, within ybjJ at 885.674 kb on + strand, within ybjJ at 885.689 kb on - strand, within ybjJ at 885.693 kb on + strand, within ybjJ at 885.706 kb on + strand, within ybjJ at 885.743 kb on + strand, within ybjJ at 885.909 kb on - strand, within ybjJ at 885.951 kb on + strand, within ybjJ at 886.005 kb on - strand, within ybjJ at 886.291 kb on + strand, within ybjJ at 886.291 kb on + strand, within ybjJ at 886.313 kb on + strand, within ybjJ at 886.363 kb on + strand, within ybjJ at 886.395 kb on - strand, within ybjJ at 886.430 kb on + strand, within ybjJ at 886.457 kb on + strand at 886.522 kb on - strand at 886.522 kb on - strand at 886.814 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.840 kb on + strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.926 kb on - strand, within ybjK at 886.977 kb on - strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.169 kb on - strand at 887.169 kb on - strand at 887.170 kb on - strand at 887.286 kb on - strand at 887.292 kb on + strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.418 kb on - strand at 887.441 kb on + strand at 887.442 kb on - strand at 887.449 kb on - strand at 887.449 kb on - strand at 887.515 kb on + strand at 887.554 kb on + strand, within ybjL
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 884,355 + ybjH b0843 0.65 -1.7 884,355 + ybjH b0843 0.65 +2.9 884,502 + +1.0 884,523 - -2.1 884,553 - +0.3 884,594 + +0.9 884,613 - -2.8 884,613 - -0.7 884,674 + b0844 b0844 0.17 -1.9 884,692 + b0844 b0844 0.19 +0.6 884,713 + b0844 b0844 0.21 +2.5 884,789 - b0844 b0844 0.31 -1.6 884,807 + b0844 b0844 0.33 -0.4 884,815 - b0844 b0844 0.34 -1.4 884,833 + b0844 b0844 0.36 -0.1 884,835 + b0844 b0844 0.36 +1.3 884,956 - b0844 b0844 0.51 +0.3 884,956 - b0844 b0844 0.51 -1.0 885,073 + b0844 b0844 0.65 -1.3 885,095 + b0844 b0844 0.68 -2.4 885,095 + b0844 b0844 0.68 -1.4 885,095 + b0844 b0844 0.68 +1.5 885,105 - b0844 b0844 0.69 -0.6 885,133 + b0844 b0844 0.73 +0.5 885,226 + b0844 b0844 0.84 +1.3 885,231 + b0844 b0844 0.85 -0.6 885,245 - b0844 b0844 0.87 -2.2 885,245 - b0844 b0844 0.87 -0.7 885,245 - b0844 b0844 0.87 -1.0 885,268 - b0844 b0844 0.89 -1.9 885,268 - b0844 b0844 0.89 -2.4 885,272 + b0844 b0844 0.90 -1.0 885,272 + b0844 b0844 0.90 -0.9 885,272 + b0844 b0844 0.90 +1.2 885,280 - -1.3 885,280 - -2.6 885,296 - -2.9 885,320 - -1.3 885,350 - -1.5 885,471 - -3.0 885,494 - ybjJ b0845 0.12 -0.7 885,533 + ybjJ b0845 0.15 -1.7 885,533 + ybjJ b0845 0.15 -1.3 885,551 - ybjJ b0845 0.16 -2.6 885,626 - ybjJ b0845 0.22 -3.0 885,628 + ybjJ b0845 0.23 +0.4 885,674 + ybjJ b0845 0.26 -0.3 885,674 + ybjJ b0845 0.26 +0.8 885,689 - ybjJ b0845 0.28 -2.9 885,693 + ybjJ b0845 0.28 +1.0 885,706 + ybjJ b0845 0.29 -0.2 885,743 + ybjJ b0845 0.32 +0.7 885,909 - ybjJ b0845 0.46 -2.4 885,951 + ybjJ b0845 0.49 +1.5 886,005 - ybjJ b0845 0.54 -0.6 886,291 + ybjJ b0845 0.78 +2.4 886,291 + ybjJ b0845 0.78 +0.1 886,313 + ybjJ b0845 0.79 +1.2 886,363 + ybjJ b0845 0.83 -1.0 886,395 - ybjJ b0845 0.86 -1.9 886,430 + ybjJ b0845 0.89 -1.5 886,457 + +0.1 886,522 - -3.0 886,522 - -0.5 886,814 - ybjK b0846 0.31 +2.7 886,815 - ybjK b0846 0.31 -2.0 886,815 - ybjK b0846 0.31 +1.1 886,822 + ybjK b0846 0.33 +2.7 886,822 + ybjK b0846 0.33 +1.9 886,840 + ybjK b0846 0.36 +3.0 886,887 - ybjK b0846 0.45 +3.1 886,887 - ybjK b0846 0.45 +2.5 886,926 - ybjK b0846 0.52 +1.5 886,977 - ybjK b0846 0.62 -0.7 887,034 + ybjK b0846 0.72 +3.3 887,034 + ybjK b0846 0.72 +0.3 887,034 + ybjK b0846 0.72 +2.6 887,169 - -1.3 887,169 - +3.6 887,170 - +0.7 887,286 - -1.6 887,292 + +0.4 887,399 - -1.5 887,399 - -1.0 887,399 - -1.5 887,418 - +0.3 887,441 + +0.6 887,442 - +1.2 887,449 - -0.7 887,449 - +0.4 887,515 + -1.5 887,554 + ybjL b0847 0.12 -1.0
Or see this region's nucleotide sequence