Strain Fitness in Escherichia coli BW25113 around b0811

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglnQ and glnP overlap by 4 nucleotidesglnP and glnH are separated by 138 nucleotidesglnH and dps are separated by 403 nucleotides b0809: glnQ - glutamine ABC transporter ATP-binding protein (NCBI), at 844,964 to 845,686 glnQ b0810: glnP - glutamine ABC transporter permease protein (NCBI), at 845,683 to 846,342 glnP b0811: glnH - glutamine ABC transporter periplasmic protein (NCBI), at 846,481 to 847,227 glnH b0812: dps - DNA protection during starvation conditions (NCBI), at 847,631 to 848,134 dps Position (kb) 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 845.547 kb on - strand, within glnQat 845.569 kb on + strand, within glnQat 845.596 kb on - strand, within glnQat 845.596 kb on - strand, within glnQat 845.994 kb on + strand, within glnPat 845.994 kb on + strand, within glnPat 845.997 kb on - strand, within glnPat 845.998 kb on + strand, within glnPat 845.998 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.085 kb on + strand, within glnPat 846.154 kb on - strand, within glnPat 846.209 kb on - strand, within glnPat 846.326 kb on + strandat 846.326 kb on + strandat 846.420 kb on + strandat 846.420 kb on + strandat 846.434 kb on + strandat 846.434 kb on + strandat 846.502 kb on - strandat 846.583 kb on + strand, within glnHat 846.583 kb on + strand, within glnHat 846.604 kb on + strand, within glnHat 846.658 kb on - strand, within glnHat 846.694 kb on + strand, within glnHat 846.727 kb on - strand, within glnHat 846.729 kb on + strand, within glnHat 846.731 kb on + strand, within glnHat 846.734 kb on - strand, within glnHat 846.745 kb on - strand, within glnHat 846.745 kb on - strand, within glnHat 846.812 kb on - strand, within glnHat 846.817 kb on + strand, within glnHat 846.817 kb on + strand, within glnHat 847.125 kb on + strand, within glnHat 847.125 kb on + strand, within glnHat 847.218 kb on - strandat 847.218 kb on - strandat 847.222 kb on + strandat 847.413 kb on + strandat 847.599 kb on + strandat 847.608 kb on + strandat 847.608 kb on + strandat 847.766 kb on - strand, within dpsat 847.861 kb on + strand, within dpsat 847.887 kb on - strand, within dpsat 847.918 kb on - strand, within dpsat 847.970 kb on + strand, within dpsat 848.006 kb on - strand, within dpsat 848.009 kb on - strand, within dpsat 848.009 kb on - strand, within dpsat 848.033 kb on + strand, within dpsat 848.041 kb on + strand, within dpsat 848.041 kb on + strand, within dpsat 848.066 kb on + strand, within dpsat 848.072 kb on - strand, within dpsat 848.074 kb on - strand, within dpsat 848.076 kb on + strand, within dpsat 848.182 kb on + strandat 848.192 kb on + strandat 848.207 kb on - strandat 848.207 kb on - strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.221 kb on + strandat 848.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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845,547 - glnQ b0809 0.81 +0.7
845,569 + glnQ b0809 0.84 +0.7
845,596 - glnQ b0809 0.87 +2.0
845,596 - glnQ b0809 0.87 -0.3
845,994 + glnP b0810 0.47 +0.1
845,994 + glnP b0810 0.47 +1.9
845,997 - glnP b0810 0.48 -0.3
845,998 + glnP b0810 0.48 +1.6
845,998 + glnP b0810 0.48 -0.4
846,069 + glnP b0810 0.58 +2.1
846,069 + glnP b0810 0.58 -0.3
846,069 + glnP b0810 0.58 +0.2
846,085 + glnP b0810 0.61 +0.9
846,154 - glnP b0810 0.71 +1.4
846,209 - glnP b0810 0.80 +1.9
846,326 + +1.2
846,326 + +1.2
846,420 + +0.1
846,420 + -1.0
846,434 + +0.3
846,434 + -0.3
846,502 - -3.2
846,583 + glnH b0811 0.14 +3.3
846,583 + glnH b0811 0.14 +0.3
846,604 + glnH b0811 0.16 +0.6
846,658 - glnH b0811 0.24 +1.9
846,694 + glnH b0811 0.29 +0.6
846,727 - glnH b0811 0.33 +0.8
846,729 + glnH b0811 0.33 +2.8
846,731 + glnH b0811 0.33 +1.0
846,734 - glnH b0811 0.34 +0.6
846,745 - glnH b0811 0.35 +1.6
846,745 - glnH b0811 0.35 +1.3
846,812 - glnH b0811 0.44 -1.7
846,817 + glnH b0811 0.45 +1.7
846,817 + glnH b0811 0.45 -0.4
847,125 + glnH b0811 0.86 +1.0
847,125 + glnH b0811 0.86 +0.9
847,218 - -0.3
847,218 - -0.3
847,222 + +0.7
847,413 + +1.0
847,599 + +2.1
847,608 + -1.0
847,608 + +0.7
847,766 - dps b0812 0.27 +0.5
847,861 + dps b0812 0.46 -0.4
847,887 - dps b0812 0.51 -0.3
847,918 - dps b0812 0.57 -0.3
847,970 + dps b0812 0.67 -2.3
848,006 - dps b0812 0.74 -1.9
848,009 - dps b0812 0.75 -1.5
848,009 - dps b0812 0.75 +1.4
848,033 + dps b0812 0.80 +1.1
848,041 + dps b0812 0.81 +1.0
848,041 + dps b0812 0.81 -0.3
848,066 + dps b0812 0.86 +0.7
848,072 - dps b0812 0.88 +0.6
848,074 - dps b0812 0.88 -2.6
848,076 + dps b0812 0.88 +1.5
848,182 + +1.3
848,192 + -0.7
848,207 - -1.9
848,207 - -0.5
848,208 + +1.5
848,208 + -0.9
848,208 + +1.6
848,208 + -0.3
848,216 - +2.1
848,216 - -0.3
848,216 - -1.9
848,216 - -0.0
848,221 + +0.7
848,227 + -0.7

Or see this region's nucleotide sequence