Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhF and ybhG overlap by 8 nucleotides ybhG and ybiH overlap by 1 nucleotides ybiH and rhlE are separated by 228 nucleotides
b0794: ybhF - putative ATP-binding component of a transport system (VIMSS), at 826,468 to 828,204
ybhF
b0795: ybhG - hypothetical protein (NCBI), at 828,197 to 829,195
ybhG
b0796: ybiH - putative transcriptional regulator (VIMSS), at 829,195 to 829,866
ybiH
b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459
rhlE
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 827.246 kb on - strand, within ybhF at 827.246 kb on - strand, within ybhF at 827.256 kb on - strand, within ybhF at 827.256 kb on - strand, within ybhF at 827.256 kb on - strand, within ybhF at 827.288 kb on - strand, within ybhF at 827.288 kb on - strand, within ybhF at 827.464 kb on + strand, within ybhF at 827.470 kb on + strand, within ybhF at 827.547 kb on - strand, within ybhF at 827.549 kb on + strand, within ybhF at 827.549 kb on + strand, within ybhF at 827.554 kb on + strand, within ybhF at 827.881 kb on + strand, within ybhF at 827.906 kb on - strand, within ybhF at 827.949 kb on + strand, within ybhF at 828.002 kb on - strand, within ybhF at 828.002 kb on - strand, within ybhF at 828.069 kb on + strand at 828.073 kb on - strand at 828.130 kb on - strand at 828.143 kb on + strand at 828.156 kb on - strand at 828.197 kb on + strand at 828.197 kb on + strand at 828.205 kb on - strand at 828.207 kb on - strand at 828.311 kb on - strand, within ybhG at 828.410 kb on - strand, within ybhG at 828.469 kb on + strand, within ybhG at 828.502 kb on - strand, within ybhG at 828.504 kb on + strand, within ybhG at 828.528 kb on - strand, within ybhG at 828.528 kb on - strand, within ybhG at 828.620 kb on - strand, within ybhG at 828.725 kb on - strand, within ybhG at 828.876 kb on + strand, within ybhG at 828.906 kb on - strand, within ybhG at 828.949 kb on - strand, within ybhG at 828.953 kb on + strand, within ybhG at 828.959 kb on - strand, within ybhG at 828.959 kb on - strand, within ybhG at 828.978 kb on + strand, within ybhG at 828.978 kb on + strand, within ybhG at 829.047 kb on - strand at 829.088 kb on - strand, within ybhG at 829.093 kb on - strand, within ybhG at 829.295 kb on - strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.535 kb on - strand, within ybiH at 829.598 kb on + strand, within ybiH at 829.679 kb on + strand, within ybiH at 829.841 kb on - strand at 829.841 kb on - strand at 829.845 kb on - strand at 829.858 kb on + strand at 829.996 kb on + strand at 830.051 kb on + strand at 830.059 kb on + strand at 830.059 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.146 kb on + strand at 830.156 kb on + strand at 830.159 kb on - strand at 830.176 kb on - strand at 830.182 kb on + strand at 830.182 kb on + strand at 830.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 827,246 - ybhF b0794 0.45 +0.7 827,246 - ybhF b0794 0.45 -1.0 827,256 - ybhF b0794 0.45 +0.1 827,256 - ybhF b0794 0.45 -0.8 827,256 - ybhF b0794 0.45 -1.5 827,288 - ybhF b0794 0.47 +2.3 827,288 - ybhF b0794 0.47 -0.3 827,464 + ybhF b0794 0.57 -1.5 827,470 + ybhF b0794 0.58 -0.0 827,547 - ybhF b0794 0.62 -0.9 827,549 + ybhF b0794 0.62 +1.0 827,549 + ybhF b0794 0.62 -1.3 827,554 + ybhF b0794 0.63 +1.0 827,881 + ybhF b0794 0.81 -3.1 827,906 - ybhF b0794 0.83 -0.1 827,949 + ybhF b0794 0.85 +1.3 828,002 - ybhF b0794 0.88 +0.7 828,002 - ybhF b0794 0.88 +1.7 828,069 + -3.2 828,073 - -0.6 828,130 - +0.6 828,143 + +0.3 828,156 - +0.9 828,197 + +0.1 828,197 + +1.0 828,205 - -1.0 828,207 - -0.4 828,311 - ybhG b0795 0.11 -0.7 828,410 - ybhG b0795 0.21 +1.5 828,469 + ybhG b0795 0.27 -0.3 828,502 - ybhG b0795 0.31 -3.2 828,504 + ybhG b0795 0.31 -1.9 828,528 - ybhG b0795 0.33 -2.2 828,528 - ybhG b0795 0.33 -1.7 828,620 - ybhG b0795 0.42 +2.1 828,725 - ybhG b0795 0.53 +0.1 828,876 + ybhG b0795 0.68 +0.4 828,906 - ybhG b0795 0.71 +1.0 828,949 - ybhG b0795 0.75 -1.0 828,953 + ybhG b0795 0.76 -0.3 828,959 - ybhG b0795 0.76 +1.2 828,959 - ybhG b0795 0.76 +2.0 828,978 + ybhG b0795 0.78 +1.0 828,978 + ybhG b0795 0.78 +2.0 829,047 - +1.3 829,088 - ybhG b0795 0.89 +1.0 829,093 - ybhG b0795 0.90 -1.1 829,295 - ybiH b0796 0.15 -0.8 829,360 + ybiH b0796 0.25 -0.3 829,360 + ybiH b0796 0.25 +0.1 829,535 - ybiH b0796 0.51 -1.9 829,598 + ybiH b0796 0.60 -1.3 829,679 + ybiH b0796 0.72 +1.1 829,841 - -0.9 829,841 - +1.4 829,845 - -0.3 829,858 + -1.0 829,996 + +1.5 830,051 + +2.3 830,059 + -1.7 830,059 + +2.6 830,123 + +1.4 830,123 + +0.8 830,123 + +0.8 830,146 + +2.0 830,156 + -0.1 830,159 - +1.6 830,176 - -1.8 830,182 + +2.0 830,182 + -0.7 830,192 - +0.5
Or see this region's nucleotide sequence