Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rihA and gltL are separated by 117 nucleotides gltL and gltK overlap by 1 nucleotides gltK and gltJ overlap by 1 nucleotides
b0651: rihA - ribonucleoside hydrolase 1 (NCBI), at 682,700 to 683,635
rihA
b0652: gltL - glutamate and aspartate transporter subunit (NCBI), at 683,753 to 684,478
gltL
b0653: gltK - glutamate and aspartate transporter subunit (NCBI), at 684,478 to 685,152
gltK
b0654: gltJ - glutamate and aspartate transporter subunit (NCBI), at 685,152 to 685,892
gltJ
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 682.763 kb on - strand at 682.763 kb on - strand at 682.763 kb on - strand at 682.773 kb on - strand at 682.781 kb on - strand at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.859 kb on + strand, within rihA at 682.867 kb on - strand, within rihA at 682.869 kb on - strand, within rihA at 682.877 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.892 kb on - strand, within rihA at 682.899 kb on + strand, within rihA at 682.901 kb on - strand, within rihA at 682.905 kb on + strand, within rihA at 682.906 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.911 kb on + strand, within rihA at 682.911 kb on + strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 683.012 kb on - strand, within rihA at 683.065 kb on + strand, within rihA at 683.083 kb on - strand, within rihA at 683.083 kb on - strand, within rihA at 683.171 kb on + strand, within rihA at 683.178 kb on - strand at 683.269 kb on + strand, within rihA at 683.284 kb on - strand, within rihA at 683.570 kb on + strand at 683.575 kb on + strand at 683.595 kb on + strand at 683.629 kb on + strand at 683.741 kb on - strand at 683.759 kb on - strand at 683.810 kb on - strand at 684.018 kb on + strand, within gltL at 684.018 kb on + strand, within gltL at 684.026 kb on - strand, within gltL at 684.026 kb on - strand, within gltL at 684.222 kb on + strand, within gltL at 684.225 kb on - strand, within gltL at 684.225 kb on - strand, within gltL at 684.414 kb on + strand at 684.414 kb on + strand at 684.519 kb on + strand at 684.571 kb on - strand, within gltK at 684.631 kb on + strand, within gltK at 684.633 kb on - strand, within gltK at 684.650 kb on + strand, within gltK at 684.650 kb on + strand, within gltK at 684.658 kb on - strand, within gltK at 684.658 kb on - strand, within gltK at 684.660 kb on + strand, within gltK at 684.679 kb on - strand, within gltK at 684.679 kb on - strand, within gltK at 684.731 kb on - strand, within gltK at 684.818 kb on - strand, within gltK at 685.049 kb on + strand, within gltK at 685.049 kb on + strand, within gltK at 685.128 kb on - strand at 685.273 kb on - strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.367 kb on + strand, within gltJ at 685.421 kb on + strand, within gltJ
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 682,763 - +0.2 682,763 - +0.5 682,763 - -0.7 682,773 - +0.3 682,781 - +1.1 682,833 - rihA b0651 0.14 +0.3 682,833 - rihA b0651 0.14 -1.0 682,833 - rihA b0651 0.14 -0.1 682,833 - rihA b0651 0.14 +3.2 682,850 - rihA b0651 0.16 +1.2 682,850 - rihA b0651 0.16 -1.6 682,859 + rihA b0651 0.17 -1.1 682,867 - rihA b0651 0.18 +1.3 682,869 - rihA b0651 0.18 -0.7 682,877 - rihA b0651 0.19 -1.0 682,882 - rihA b0651 0.19 -0.4 682,882 - rihA b0651 0.19 -2.2 682,892 - rihA b0651 0.21 +0.3 682,899 + rihA b0651 0.21 +0.8 682,901 - rihA b0651 0.21 +0.6 682,905 + rihA b0651 0.22 -1.7 682,906 - rihA b0651 0.22 +0.5 682,910 - rihA b0651 0.22 +1.0 682,910 - rihA b0651 0.22 +2.3 682,911 + rihA b0651 0.23 +0.3 682,911 + rihA b0651 0.23 +0.3 682,913 - rihA b0651 0.23 -0.8 682,913 - rihA b0651 0.23 -0.4 682,913 - rihA b0651 0.23 -2.4 682,913 - rihA b0651 0.23 +1.8 682,913 - rihA b0651 0.23 -0.5 682,913 - rihA b0651 0.23 +0.4 682,921 - rihA b0651 0.24 -0.2 682,921 - rihA b0651 0.24 -1.2 682,921 - rihA b0651 0.24 -0.7 682,921 - rihA b0651 0.24 -1.5 683,012 - rihA b0651 0.33 -1.8 683,065 + rihA b0651 0.39 -1.3 683,083 - rihA b0651 0.41 -2.6 683,083 - rihA b0651 0.41 -2.7 683,171 + rihA b0651 0.50 +0.2 683,178 - +3.2 683,269 + rihA b0651 0.61 -2.1 683,284 - rihA b0651 0.62 -0.2 683,570 + -0.2 683,575 + +0.5 683,595 + -2.1 683,629 + +2.2 683,741 - +0.4 683,759 - +0.8 683,810 - +2.1 684,018 + gltL b0652 0.37 -1.5 684,018 + gltL b0652 0.37 -0.7 684,026 - gltL b0652 0.38 -1.2 684,026 - gltL b0652 0.38 +0.2 684,222 + gltL b0652 0.65 -0.3 684,225 - gltL b0652 0.65 -0.7 684,225 - gltL b0652 0.65 -1.5 684,414 + +0.0 684,414 + -1.7 684,519 + +1.8 684,571 - gltK b0653 0.14 +0.6 684,631 + gltK b0653 0.23 -0.5 684,633 - gltK b0653 0.23 +0.3 684,650 + gltK b0653 0.25 +1.5 684,650 + gltK b0653 0.25 -1.5 684,658 - gltK b0653 0.27 -2.1 684,658 - gltK b0653 0.27 -0.2 684,660 + gltK b0653 0.27 +0.9 684,679 - gltK b0653 0.30 +3.2 684,679 - gltK b0653 0.30 +2.2 684,731 - gltK b0653 0.37 -3.0 684,818 - gltK b0653 0.50 -0.3 685,049 + gltK b0653 0.85 +0.9 685,049 + gltK b0653 0.85 +1.6 685,128 - +1.3 685,273 - gltJ b0654 0.16 -0.6 685,314 + gltJ b0654 0.22 +1.3 685,314 + gltJ b0654 0.22 +1.3 685,367 + gltJ b0654 0.29 +2.1 685,421 + gltJ b0654 0.36 +0.1
Or see this region's nucleotide sequence