Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hscC and rihA are separated by 83 nucleotides rihA and gltL are separated by 117 nucleotides gltL and gltK overlap by 1 nucleotides
b0650: hscC - Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI), at 680,946 to 682,616
hscC
b0651: rihA - ribonucleoside hydrolase 1 (NCBI), at 682,700 to 683,635
rihA
b0652: gltL - glutamate and aspartate transporter subunit (NCBI), at 683,753 to 684,478
gltL
b0653: gltK - glutamate and aspartate transporter subunit (NCBI), at 684,478 to 685,152
gltK
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 681.949 kb on + strand, within hscC at 682.057 kb on + strand, within hscC at 682.065 kb on + strand, within hscC at 682.073 kb on - strand, within hscC at 682.133 kb on - strand, within hscC at 682.140 kb on + strand, within hscC at 682.141 kb on + strand, within hscC at 682.141 kb on + strand, within hscC at 682.156 kb on + strand, within hscC at 682.156 kb on + strand, within hscC at 682.159 kb on + strand, within hscC at 682.169 kb on + strand, within hscC at 682.181 kb on + strand, within hscC at 682.181 kb on + strand, within hscC at 682.197 kb on + strand, within hscC at 682.213 kb on + strand, within hscC at 682.213 kb on + strand, within hscC at 682.217 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.270 kb on + strand, within hscC at 682.317 kb on + strand, within hscC at 682.322 kb on + strand, within hscC at 682.332 kb on + strand, within hscC at 682.332 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.346 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.376 kb on + strand, within hscC at 682.414 kb on - strand, within hscC at 682.439 kb on + strand, within hscC at 682.447 kb on - strand, within hscC at 682.447 kb on - strand, within hscC at 682.577 kb on - strand at 682.591 kb on - strand at 682.591 kb on - strand at 682.592 kb on - strand at 682.667 kb on - strand at 682.705 kb on - strand at 682.705 kb on - strand at 682.738 kb on - strand at 682.738 kb on - strand at 682.741 kb on - strand at 682.747 kb on + strand at 682.749 kb on - strand at 682.749 kb on - strand at 682.763 kb on - strand at 682.763 kb on - strand at 682.763 kb on - strand at 682.773 kb on - strand at 682.781 kb on - strand at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.859 kb on + strand, within rihA at 682.867 kb on - strand, within rihA at 682.869 kb on - strand, within rihA at 682.877 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.892 kb on - strand, within rihA at 682.899 kb on + strand, within rihA at 682.901 kb on - strand, within rihA at 682.905 kb on + strand, within rihA at 682.906 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.911 kb on + strand, within rihA at 682.911 kb on + strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 683.012 kb on - strand, within rihA at 683.065 kb on + strand, within rihA at 683.083 kb on - strand, within rihA at 683.083 kb on - strand, within rihA at 683.171 kb on + strand, within rihA at 683.178 kb on - strand at 683.269 kb on + strand, within rihA at 683.284 kb on - strand, within rihA at 683.570 kb on + strand at 683.575 kb on + strand at 683.595 kb on + strand at 683.629 kb on + strand at 683.741 kb on - strand at 683.759 kb on - strand at 683.810 kb on - strand at 684.018 kb on + strand, within gltL at 684.018 kb on + strand, within gltL at 684.026 kb on - strand, within gltL at 684.026 kb on - strand, within gltL at 684.222 kb on + strand, within gltL at 684.225 kb on - strand, within gltL at 684.225 kb on - strand, within gltL at 684.414 kb on + strand at 684.414 kb on + strand at 684.519 kb on + strand at 684.571 kb on - strand, within gltK at 684.631 kb on + strand, within gltK at 684.633 kb on - strand, within gltK
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 681,949 + hscC b0650 0.60 -1.5 682,057 + hscC b0650 0.66 -0.8 682,065 + hscC b0650 0.67 +0.3 682,073 - hscC b0650 0.67 +0.6 682,133 - hscC b0650 0.71 +0.3 682,140 + hscC b0650 0.71 +0.7 682,141 + hscC b0650 0.72 +1.9 682,141 + hscC b0650 0.72 -1.8 682,156 + hscC b0650 0.72 -1.2 682,156 + hscC b0650 0.72 +0.9 682,159 + hscC b0650 0.73 -0.7 682,169 + hscC b0650 0.73 +1.3 682,181 + hscC b0650 0.74 +0.3 682,181 + hscC b0650 0.74 +1.3 682,197 + hscC b0650 0.75 +2.1 682,213 + hscC b0650 0.76 -1.5 682,213 + hscC b0650 0.76 +0.5 682,217 + hscC b0650 0.76 +0.6 682,222 + hscC b0650 0.76 +2.3 682,222 + hscC b0650 0.76 -1.0 682,222 + hscC b0650 0.76 -0.1 682,222 + hscC b0650 0.76 +1.7 682,270 + hscC b0650 0.79 +2.4 682,317 + hscC b0650 0.82 -0.2 682,322 + hscC b0650 0.82 +1.2 682,332 + hscC b0650 0.83 +0.5 682,332 + hscC b0650 0.83 -0.4 682,337 + hscC b0650 0.83 +1.1 682,337 + hscC b0650 0.83 +1.2 682,337 + hscC b0650 0.83 +0.2 682,346 + hscC b0650 0.84 -1.7 682,352 + hscC b0650 0.84 +0.9 682,352 + hscC b0650 0.84 -1.2 682,352 + hscC b0650 0.84 -0.1 682,376 + hscC b0650 0.86 -2.8 682,414 - hscC b0650 0.88 +1.2 682,439 + hscC b0650 0.89 +1.0 682,447 - hscC b0650 0.90 -0.7 682,447 - hscC b0650 0.90 +0.0 682,577 - +1.1 682,591 - +0.1 682,591 - +0.9 682,592 - -1.5 682,667 - +0.9 682,705 - -2.0 682,705 - +0.8 682,738 - +0.7 682,738 - -0.5 682,741 - +0.6 682,747 + -1.5 682,749 - +0.8 682,749 - +1.6 682,763 - +0.2 682,763 - +0.5 682,763 - -0.7 682,773 - +0.3 682,781 - +1.1 682,833 - rihA b0651 0.14 +0.3 682,833 - rihA b0651 0.14 -1.0 682,833 - rihA b0651 0.14 -0.1 682,833 - rihA b0651 0.14 +3.2 682,850 - rihA b0651 0.16 +1.2 682,850 - rihA b0651 0.16 -1.6 682,859 + rihA b0651 0.17 -1.1 682,867 - rihA b0651 0.18 +1.3 682,869 - rihA b0651 0.18 -0.7 682,877 - rihA b0651 0.19 -1.0 682,882 - rihA b0651 0.19 -0.4 682,882 - rihA b0651 0.19 -2.2 682,892 - rihA b0651 0.21 +0.3 682,899 + rihA b0651 0.21 +0.8 682,901 - rihA b0651 0.21 +0.6 682,905 + rihA b0651 0.22 -1.7 682,906 - rihA b0651 0.22 +0.5 682,910 - rihA b0651 0.22 +1.0 682,910 - rihA b0651 0.22 +2.3 682,911 + rihA b0651 0.23 +0.3 682,911 + rihA b0651 0.23 +0.3 682,913 - rihA b0651 0.23 -0.8 682,913 - rihA b0651 0.23 -0.4 682,913 - rihA b0651 0.23 -2.4 682,913 - rihA b0651 0.23 +1.8 682,913 - rihA b0651 0.23 -0.5 682,913 - rihA b0651 0.23 +0.4 682,921 - rihA b0651 0.24 -0.2 682,921 - rihA b0651 0.24 -1.2 682,921 - rihA b0651 0.24 -0.7 682,921 - rihA b0651 0.24 -1.5 683,012 - rihA b0651 0.33 -1.8 683,065 + rihA b0651 0.39 -1.3 683,083 - rihA b0651 0.41 -2.6 683,083 - rihA b0651 0.41 -2.7 683,171 + rihA b0651 0.50 +0.2 683,178 - +3.2 683,269 + rihA b0651 0.61 -2.1 683,284 - rihA b0651 0.62 -0.2 683,570 + -0.2 683,575 + +0.5 683,595 + -2.1 683,629 + +2.2 683,741 - +0.4 683,759 - +0.8 683,810 - +2.1 684,018 + gltL b0652 0.37 -1.5 684,018 + gltL b0652 0.37 -0.7 684,026 - gltL b0652 0.38 -1.2 684,026 - gltL b0652 0.38 +0.2 684,222 + gltL b0652 0.65 -0.3 684,225 - gltL b0652 0.65 -0.7 684,225 - gltL b0652 0.65 -1.5 684,414 + +0.0 684,414 + -1.7 684,519 + +1.8 684,571 - gltK b0653 0.14 +0.6 684,631 + gltK b0653 0.23 -0.5 684,633 - gltK b0653 0.23 +0.3
Or see this region's nucleotide sequence