Strain Fitness in Escherichia coli BW25113 around b0485
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
509,929 | + | copA | b0484 | 0.73 | -2.0 |
509,935 | + | copA | b0484 | 0.73 | -1.3 |
510,004 | - | copA | b0484 | 0.76 | +1.8 |
510,019 | + | copA | b0484 | 0.77 | -0.3 |
510,186 | + | copA | b0484 | 0.83 | -2.8 |
510,217 | - | copA | b0484 | 0.85 | +0.7 |
510,217 | - | copA | b0484 | 0.85 | +1.6 |
510,264 | - | copA | b0484 | 0.86 | -1.3 |
510,266 | + | copA | b0484 | 0.87 | -1.8 |
510,272 | + | copA | b0484 | 0.87 | -2.1 |
510,277 | + | copA | b0484 | 0.87 | +1.9 |
510,453 | + | -0.8 | |||
510,461 | - | -0.7 | |||
510,461 | - | -2.0 | |||
510,488 | + | +1.0 | |||
510,515 | - | -1.7 | |||
510,523 | - | +1.3 | |||
510,525 | + | +2.9 | |||
510,525 | + | -1.8 | |||
510,587 | - | +0.7 | |||
510,631 | - | +2.4 | |||
510,651 | - | +0.2 | |||
510,652 | - | +0.8 | |||
510,844 | + | -0.8 | |||
510,903 | + | +1.3 | |||
510,903 | + | +1.9 | |||
510,979 | - | ybaS | b0485 | 0.12 | +0.2 |
510,979 | - | ybaS | b0485 | 0.12 | -2.1 |
511,000 | - | ybaS | b0485 | 0.14 | -0.8 |
511,172 | + | ybaS | b0485 | 0.33 | -1.5 |
511,172 | + | ybaS | b0485 | 0.33 | +2.3 |
511,359 | + | ybaS | b0485 | 0.53 | -0.3 |
511,389 | - | ybaS | b0485 | 0.56 | -0.2 |
511,392 | - | ybaS | b0485 | 0.56 | +1.9 |
511,434 | + | ybaS | b0485 | 0.61 | -0.3 |
511,583 | + | ybaS | b0485 | 0.77 | +0.7 |
511,583 | + | ybaS | b0485 | 0.77 | +1.5 |
511,673 | + | ybaS | b0485 | 0.87 | +0.9 |
511,673 | + | ybaS | b0485 | 0.87 | +0.8 |
511,673 | + | ybaS | b0485 | 0.87 | -0.5 |
511,980 | + | ybaT | b0486 | 0.14 | +2.9 |
512,081 | + | ybaT | b0486 | 0.22 | -2.0 |
512,081 | + | ybaT | b0486 | 0.22 | -0.4 |
512,171 | + | ybaT | b0486 | 0.29 | +2.8 |
512,239 | - | ybaT | b0486 | 0.34 | -0.3 |
512,413 | - | ybaT | b0486 | 0.47 | -0.1 |
512,414 | - | ybaT | b0486 | 0.47 | -0.2 |
512,514 | - | ybaT | b0486 | 0.55 | +1.2 |
512,567 | - | ybaT | b0486 | 0.59 | +1.8 |
512,604 | + | ybaT | b0486 | 0.62 | +0.9 |
512,771 | + | ybaT | b0486 | 0.75 | +0.7 |
Or see this region's nucleotide sequence