Strain Fitness in Escherichia coli BW25113 around b0484
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
507,170 | - | ybaP | b0482 | 0.83 | +0.2 |
507,254 | - | +1.1 | |||
507,573 | + | ybaQ | b0483 | 0.38 | -0.8 |
507,573 | + | ybaQ | b0483 | 0.38 | +0.2 |
507,576 | - | ybaQ | b0483 | 0.39 | +0.8 |
507,576 | - | ybaQ | b0483 | 0.39 | +0.2 |
507,581 | - | ybaQ | b0483 | 0.41 | +0.1 |
507,604 | - | ybaQ | b0483 | 0.47 | +0.2 |
507,720 | - | ybaQ | b0483 | 0.81 | +1.1 |
507,723 | + | ybaQ | b0483 | 0.82 | +0.9 |
507,731 | - | ybaQ | b0483 | 0.85 | -0.7 |
507,731 | - | ybaQ | b0483 | 0.85 | +0.9 |
507,752 | + | +1.3 | |||
507,752 | + | -0.3 | |||
507,760 | - | -0.3 | |||
507,760 | - | +0.3 | |||
508,029 | - | +0.2 | |||
508,043 | + | +0.2 | |||
508,098 | - | -2.1 | |||
508,098 | - | -1.3 | |||
508,141 | - | +1.0 | |||
508,148 | - | -1.8 | |||
508,189 | + | +1.1 | |||
508,189 | + | +0.7 | |||
508,412 | + | copA | b0484 | 0.12 | +0.7 |
508,433 | + | copA | b0484 | 0.13 | +0.7 |
508,452 | + | copA | b0484 | 0.14 | -0.2 |
508,452 | + | copA | b0484 | 0.14 | -1.7 |
508,475 | - | copA | b0484 | 0.15 | +0.6 |
508,585 | + | copA | b0484 | 0.19 | -0.7 |
508,585 | + | copA | b0484 | 0.19 | +0.0 |
508,601 | - | copA | b0484 | 0.20 | -1.2 |
508,608 | - | +1.3 | |||
508,646 | - | copA | b0484 | 0.22 | -2.3 |
508,646 | - | copA | b0484 | 0.22 | -3.8 |
508,704 | + | copA | b0484 | 0.24 | -1.1 |
508,783 | - | copA | b0484 | 0.27 | -0.3 |
508,878 | - | copA | b0484 | 0.31 | +0.6 |
508,922 | + | copA | b0484 | 0.33 | +0.4 |
508,932 | + | copA | b0484 | 0.33 | -1.3 |
509,001 | + | copA | b0484 | 0.36 | +1.7 |
509,001 | + | copA | b0484 | 0.36 | +1.7 |
509,043 | + | copA | b0484 | 0.38 | -2.4 |
509,043 | + | copA | b0484 | 0.38 | +0.3 |
509,048 | - | copA | b0484 | 0.38 | +1.2 |
509,048 | - | copA | b0484 | 0.38 | -1.7 |
509,051 | - | copA | b0484 | 0.38 | -2.8 |
509,051 | - | copA | b0484 | 0.38 | +1.3 |
509,051 | - | copA | b0484 | 0.38 | -1.3 |
509,057 | + | copA | b0484 | 0.38 | -0.7 |
509,152 | + | copA | b0484 | 0.42 | -0.8 |
509,184 | - | copA | b0484 | 0.43 | -1.4 |
509,249 | + | copA | b0484 | 0.46 | -0.5 |
509,401 | + | copA | b0484 | 0.52 | +0.6 |
509,404 | - | copA | b0484 | 0.52 | -1.8 |
509,416 | + | copA | b0484 | 0.53 | -0.3 |
509,416 | + | copA | b0484 | 0.53 | -0.3 |
509,416 | + | copA | b0484 | 0.53 | +1.5 |
509,427 | - | copA | b0484 | 0.53 | +1.3 |
509,427 | - | copA | b0484 | 0.53 | +0.3 |
509,429 | + | copA | b0484 | 0.53 | -1.8 |
509,560 | - | copA | b0484 | 0.58 | -2.3 |
509,563 | + | copA | b0484 | 0.58 | -0.7 |
509,640 | + | copA | b0484 | 0.62 | -1.0 |
509,682 | + | copA | b0484 | 0.63 | -1.5 |
509,702 | - | copA | b0484 | 0.64 | -1.5 |
509,702 | - | copA | b0484 | 0.64 | -0.7 |
509,708 | - | copA | b0484 | 0.64 | -1.7 |
509,812 | - | copA | b0484 | 0.68 | -0.2 |
509,830 | - | copA | b0484 | 0.69 | -0.7 |
509,841 | + | copA | b0484 | 0.70 | -0.7 |
509,841 | + | copA | b0484 | 0.70 | -1.8 |
509,929 | + | copA | b0484 | 0.73 | -2.0 |
509,935 | + | copA | b0484 | 0.73 | -1.3 |
510,004 | - | copA | b0484 | 0.76 | +1.8 |
510,019 | + | copA | b0484 | 0.77 | -0.3 |
510,186 | + | copA | b0484 | 0.83 | -2.8 |
510,217 | - | copA | b0484 | 0.85 | +0.7 |
510,217 | - | copA | b0484 | 0.85 | +1.6 |
510,264 | - | copA | b0484 | 0.86 | -1.3 |
510,266 | + | copA | b0484 | 0.87 | -1.8 |
510,272 | + | copA | b0484 | 0.87 | -2.1 |
510,277 | + | copA | b0484 | 0.87 | +1.9 |
510,453 | + | -0.8 | |||
510,461 | - | -0.7 | |||
510,461 | - | -2.0 | |||
510,488 | + | +1.0 | |||
510,515 | - | -1.7 | |||
510,523 | - | +1.3 | |||
510,525 | + | +2.9 | |||
510,525 | + | -1.8 | |||
510,587 | - | +0.7 | |||
510,631 | - | +2.4 | |||
510,651 | - | +0.2 | |||
510,652 | - | +0.8 | |||
510,844 | + | -0.8 | |||
510,903 | + | +1.3 | |||
510,903 | + | +1.9 | |||
510,979 | - | ybaS | b0485 | 0.12 | +0.2 |
510,979 | - | ybaS | b0485 | 0.12 | -2.1 |
511,000 | - | ybaS | b0485 | 0.14 | -0.8 |
511,172 | + | ybaS | b0485 | 0.33 | -1.5 |
511,172 | + | ybaS | b0485 | 0.33 | +2.3 |
511,359 | + | ybaS | b0485 | 0.53 | -0.3 |
511,389 | - | ybaS | b0485 | 0.56 | -0.2 |
511,392 | - | ybaS | b0485 | 0.56 | +1.9 |
511,434 | + | ybaS | b0485 | 0.61 | -0.3 |
511,583 | + | ybaS | b0485 | 0.77 | +0.7 |
511,583 | + | ybaS | b0485 | 0.77 | +1.5 |
Or see this region's nucleotide sequence