Strain Fitness in Escherichia coli BW25113 around b0174

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdxr and ispU are separated by 185 nucleotidesispU and cdsA are separated by 12 nucleotidescdsA and yaeL are separated by 11 nucleotides b0173: dxr - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI), at 193,521 to 194,717 dxr b0174: ispU - undecaprenyl pyrophosphate synthase (NCBI), at 194,903 to 195,664 ispU b0175: cdsA - CDP-diglyceride synthetase (VIMSS), at 195,677 to 196,534 cdsA b0176: yaeL - zinc metallopeptidase (NCBI), at 196,546 to 197,898 yaeL Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1at 194.726 kb on + strandat 194.748 kb on + strandat 194.767 kb on + strandat 194.767 kb on + strandat 194.767 kb on + strandat 194.767 kb on + strandat 194.803 kb on + strandat 194.803 kb on + strandat 194.872 kb on + strandat 194.872 kb on + strandat 194.872 kb on + strandat 195.682 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
194,726 + +0.0
194,748 + -3.2
194,767 + -1.8
194,767 + +1.3
194,767 + -2.0
194,767 + -0.8
194,803 + -1.2
194,803 + +0.3
194,872 + -0.2
194,872 + -0.4
194,872 + -0.2
195,682 + -2.5

Or see this region's nucleotide sequence