Strain Fitness in Pseudomonas sp. RS175 around PFR28_03351

Experiment: L-Malic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C) 10 mM
3,856,782	-				+0.9
3,856,782	-				-0.6
3,856,831	+		PFR28_03349	0.12	-0.1
3,856,831	+		PFR28_03349	0.12	+0.1
3,856,832	-		PFR28_03349	0.12	+0.7
3,856,862	+		PFR28_03349	0.17	+0.1
3,856,932	+		PFR28_03349	0.28	+0.2
3,856,948	+		PFR28_03349	0.30	+0.7
3,856,948	+		PFR28_03349	0.30	-0.1
3,856,948	+		PFR28_03349	0.30	+0.8
3,856,948	+		PFR28_03349	0.30	-0.4
3,856,948	+		PFR28_03349	0.30	-3.0
3,856,948	+		PFR28_03349	0.30	-0.8
3,856,948	+		PFR28_03349	0.30	-0.1
3,856,948	+		PFR28_03349	0.30	+0.8
3,856,948	+		PFR28_03349	0.30	-0.1
3,856,948	+		PFR28_03349	0.30	-1.8
3,856,949	-		PFR28_03349	0.30	+1.0
3,856,949	-		PFR28_03349	0.30	-1.3
3,856,949	-		PFR28_03349	0.30	+0.4
3,856,978	+		PFR28_03349	0.35	+0.6
3,856,978	+		PFR28_03349	0.35	-0.5
3,856,978	+		PFR28_03349	0.35	+0.9
3,856,978	+		PFR28_03349	0.35	-0.2
3,856,979	-		PFR28_03349	0.35	-0.2
3,856,999	+		PFR28_03349	0.38	-0.7
3,856,999	+		PFR28_03349	0.38	-0.2
3,856,999	+		PFR28_03349	0.38	+0.2
3,857,000	-		PFR28_03349	0.38	-1.1
3,857,137	-		PFR28_03349	0.60	-1.2
3,857,266	+		PFR28_03349	0.80	-0.6
3,857,267	-		PFR28_03349	0.80	+0.1
3,857,267	-		PFR28_03349	0.80	-0.9
3,857,308	+		PFR28_03349	0.86	+1.1
3,857,308	+		PFR28_03349	0.86	-1.5
3,857,308	+		PFR28_03349	0.86	-1.3
3,857,368	+				+0.1
3,857,368	+				-1.1
3,857,368	+				+0.2
3,857,368	+				-0.2
3,857,368	+				+0.3
3,857,369	-				-0.7
3,857,460	+				-0.2
3,857,460	+				+1.5
3,857,460	+				+0.2
3,857,460	+				-0.7
3,857,460	+				+0.4
3,857,461	-				-0.5
3,857,462	+				-2.0
3,857,462	+				+0.7
3,857,462	+				-0.5
3,857,462	+				+0.7
3,857,462	+				-0.2
3,857,462	+				+0.9
3,857,462	+				-0.7
3,857,462	+				+0.5
3,857,462	+				+1.3
3,857,462	+				+0.2
3,857,462	+				-0.3
3,857,462	+				+1.5
3,857,462	+				+0.1
3,857,463	-				-2.6
3,857,463	-				+0.0
3,857,463	-				+1.5
3,857,463	-				-0.9
3,857,463	-				+1.1
3,857,463	-				+1.0
3,857,463	-				+0.4
3,857,463	-				-0.8
3,857,463	-				+0.1
3,857,463	-				-0.2
3,857,463	-				-1.1
3,857,484	+				+0.1
3,857,484	+				-0.0
3,857,485	-				+1.0
3,857,485	-				-1.1
3,857,485	-				-0.1
3,857,507	+				-0.9
3,857,508	-				+0.7
3,857,508	-				+1.9
3,857,508	-				+0.5
3,857,513	+				-2.5
3,857,514	-				+0.6
3,857,530	+		PFR28_03350	0.15	-0.5
3,857,530	+		PFR28_03350	0.15	-0.2
3,857,530	+		PFR28_03350	0.15	-1.1
3,857,530	+		PFR28_03350	0.15	+0.3
3,857,530	+		PFR28_03350	0.15	+0.2
3,857,531	-		PFR28_03350	0.16	-2.8
3,857,531	-		PFR28_03350	0.16	+0.4
3,857,531	-		PFR28_03350	0.16	-0.3
3,857,689	+				+0.4
3,857,689	+				+0.8
3,857,689	+				+1.1
3,857,689	+				+0.1
3,857,689	+				-0.1
3,857,690	-				-0.9
3,857,690	-				-0.3
3,857,690	-				-0.4
3,857,690	-				-0.2
3,857,715	+				-0.0
3,857,722	+				+0.8
3,857,722	+				-0.7
3,857,722	+				-0.8
3,857,754	+				-0.2
3,857,754	+				+0.5
3,857,755	-				+0.0
3,857,822	+		PFR28_03351	0.13	+0.0
3,857,822	+		PFR28_03351	0.13	+0.3
3,857,822	+		PFR28_03351	0.13	+0.6
3,857,822	+		PFR28_03351	0.13	+0.6
3,857,822	+		PFR28_03351	0.13	+0.5
3,857,822	+		PFR28_03351	0.13	+1.8
3,857,822	+		PFR28_03351	0.13	-0.4
3,857,823	-		PFR28_03351	0.13	-0.0
3,857,823	-		PFR28_03351	0.13	-1.2
3,857,823	-		PFR28_03351	0.13	+0.4
3,857,823	-		PFR28_03351	0.13	-0.6
3,857,823	-		PFR28_03351	0.13	+0.5
3,857,826	+		PFR28_03351	0.14	+0.7
3,857,826	+		PFR28_03351	0.14	+0.9
3,857,827	-		PFR28_03351	0.14	-1.0
3,857,977	-		PFR28_03351	0.38	+0.8
3,857,977	-		PFR28_03351	0.38	-1.8
3,857,999	+		PFR28_03351	0.41	-0.5
3,857,999	+		PFR28_03351	0.41	+0.4
3,858,000	-		PFR28_03351	0.41	+0.2
3,858,000	-		PFR28_03351	0.41	+0.2
3,858,037	+		PFR28_03351	0.47	+1.4
3,858,038	-		PFR28_03351	0.48	-0.2
3,858,316	+				-0.2
3,858,317	-				-0.3
3,858,317	-				-0.1
3,858,317	-				-1.1
3,858,360	+				-0.2
3,858,412	-				-0.8
3,858,416	+				+0.3
3,858,416	+				-2.7
3,858,476	-				-0.1
3,858,476	-				-3.0
3,858,484	+				-0.3
3,858,505	-				-0.6
3,858,505	-				+0.2
3,858,515	+				+0.1
3,858,565	+				-0.7
3,858,565	+				-0.2
3,858,565	+				-0.1
3,858,566	-				-1.0
3,858,566	-				-0.2
3,858,566	-				-0.8
3,858,566	-				-2.0
3,858,566	-				-0.8
3,858,566	-				-0.7
3,858,599	+				-1.8
3,858,600	-				-1.3
3,858,959	+		PFR28_03352	0.23	+0.3
3,858,959	+		PFR28_03352	0.23	-0.8
3,858,960	-		PFR28_03352	0.24	+0.7
3,858,962	+		PFR28_03352	0.24	+0.4
3,858,962	+		PFR28_03352	0.24	+0.2
3,858,963	-		PFR28_03352	0.24	-0.3
3,858,992	+		PFR28_03352	0.30	-1.5
3,858,993	-		PFR28_03352	0.30	+0.6
3,858,996	+		PFR28_03352	0.31	+0.5
3,858,996	+		PFR28_03352	0.31	+0.6
3,858,997	-		PFR28_03352	0.31	+1.0
3,859,000	-		PFR28_03352	0.32	+1.4
3,859,044	-		PFR28_03352	0.40	+0.6
3,859,044	-		PFR28_03352	0.40	+1.1
3,859,111	+		PFR28_03352	0.54	-0.6
3,859,111	+		PFR28_03352	0.54	+0.6
3,859,112	-		PFR28_03352	0.54	-2.3
3,859,112	-		PFR28_03352	0.54	-0.9
3,859,119	+		PFR28_03352	0.55	+0.1
3,859,155	+		PFR28_03352	0.62	+0.5
3,859,155	+		PFR28_03352	0.62	+1.1
3,859,155	+		PFR28_03352	0.62	+0.2
3,859,155	+		PFR28_03352	0.62	+0.5
3,859,155	+		PFR28_03352	0.62	+0.3
3,859,155	+		PFR28_03352	0.62	-1.0
3,859,155	+		PFR28_03352	0.62	+0.2
3,859,155	+		PFR28_03352	0.62	-0.6
3,859,155	+		PFR28_03352	0.62	+0.5
3,859,155	+		PFR28_03352	0.62	-0.4
3,859,156	-		PFR28_03352	0.63	+0.2
3,859,156	-		PFR28_03352	0.63	-0.6
3,859,156	-		PFR28_03352	0.63	+0.2
3,859,156	-		PFR28_03352	0.63	-0.9
3,859,156	-		PFR28_03352	0.63	+0.4
3,859,156	-		PFR28_03352	0.63	-0.8
3,859,156	-		PFR28_03352	0.63	+0.2
3,859,156	-		PFR28_03352	0.63	+0.2
3,859,156	-		PFR28_03352	0.63	+1.1
3,859,156	-		PFR28_03352	0.63	+0.2
3,859,156	-		PFR28_03352	0.63	+0.8
3,859,286	+		PFR28_03352	0.89	-1.4
3,859,286	+		PFR28_03352	0.89	+0.1
3,859,286	+		PFR28_03352	0.89	-1.4
3,859,286	+		PFR28_03352	0.89	+0.2
3,859,286	+		PFR28_03352	0.89	+0.2
3,859,286	+		PFR28_03352	0.89	+0.6
3,859,286	+		PFR28_03352	0.89	-0.3
3,859,286	+		PFR28_03352	0.89	-0.9
3,859,287	-		PFR28_03352	0.89	+0.5
3,859,287	-		PFR28_03352	0.89	+2.0
3,859,287	-		PFR28_03352	0.89	+0.1
3,859,287	-		PFR28_03352	0.89	+1.1
3,859,287	-		PFR28_03352	0.89	+1.5
3,859,287	-		PFR28_03352	0.89	-1.7
3,859,287	-		PFR28_03352	0.89	+0.4
3,859,287	-		PFR28_03352	0.89	+1.0
3,859,287	-		PFR28_03352	0.89	+0.9
3,859,287	-		PFR28_03352	0.89	-1.7
3,859,287	-		PFR28_03352	0.89	+0.8
3,859,287	-		PFR28_03352	0.89	-0.3
3,859,287	-		PFR28_03352	0.89	+0.3
3,859,287	-		PFR28_03352	0.89	+0.1
3,859,288	+		PFR28_03352	0.89	+0.7
3,859,288	+		PFR28_03352	0.89	+0.7
3,859,288	+		PFR28_03352	0.89	-1.3
3,859,288	+		PFR28_03352	0.89	-0.1
3,859,289	-		PFR28_03352	0.89	+0.2
3,859,289	-		PFR28_03352	0.89	+1.0
3,859,289	-		PFR28_03352	0.89	+0.4
3,859,295	+				-1.1
3,859,296	-				+0.6
3,859,340	+				-0.0
3,859,340	+				+0.7