Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4552 and Echvi_4553 are separated by 107 nucleotides Echvi_4553 and Echvi_4554 are separated by 18 nucleotides Echvi_4554 and Echvi_4555 are separated by 340 nucleotides
Echvi_4552: Echvi_4552 - Bacterial Ig-like domain (group 4)./Putative glycosyl hydrolase of unknown function (DUF1680)., at 5,447,081 to 5,450,209
_4552
Echvi_4553: Echvi_4553 - hypothetical protein, at 5,450,317 to 5,450,781
_4553
Echvi_4554: Echvi_4554 - Outer membrane receptor proteins, mostly Fe transport, at 5,450,800 to 5,453,031
_4554
Echvi_4555: Echvi_4555 - hypothetical protein, at 5,453,372 to 5,454,142
_4555
Position (kb) 5450
5451
5452
5453
5454 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5449.813 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.896 kb on - strand, within Echvi_4552 at 5449.912 kb on + strand at 5449.912 kb on + strand at 5450.065 kb on - strand at 5450.065 kb on - strand at 5450.144 kb on + strand at 5450.145 kb on - strand at 5450.183 kb on + strand at 5450.263 kb on + strand at 5450.263 kb on + strand at 5450.318 kb on + strand at 5450.323 kb on + strand at 5450.323 kb on + strand at 5450.324 kb on - strand at 5450.329 kb on - strand at 5450.329 kb on - strand at 5450.382 kb on + strand, within Echvi_4553 at 5450.423 kb on - strand, within Echvi_4553 at 5450.442 kb on - strand, within Echvi_4553 at 5450.563 kb on - strand, within Echvi_4553 at 5450.601 kb on + strand, within Echvi_4553 at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.786 kb on + strand at 5450.786 kb on + strand at 5450.794 kb on + strand at 5451.007 kb on + strand at 5451.037 kb on + strand, within Echvi_4554 at 5451.038 kb on - strand, within Echvi_4554 at 5451.090 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.097 kb on - strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.171 kb on - strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554 at 5451.211 kb on - strand, within Echvi_4554 at 5451.264 kb on + strand, within Echvi_4554 at 5451.264 kb on + strand, within Echvi_4554 at 5451.265 kb on - strand, within Echvi_4554 at 5451.266 kb on + strand, within Echvi_4554 at 5451.267 kb on - strand, within Echvi_4554 at 5451.327 kb on - strand, within Echvi_4554 at 5451.331 kb on - strand, within Echvi_4554 at 5451.345 kb on - strand, within Echvi_4554 at 5451.468 kb on - strand, within Echvi_4554 at 5451.655 kb on + strand, within Echvi_4554 at 5451.677 kb on + strand, within Echvi_4554 at 5451.678 kb on - strand, within Echvi_4554 at 5451.678 kb on - strand, within Echvi_4554 at 5451.694 kb on - strand, within Echvi_4554 at 5451.694 kb on - strand, within Echvi_4554 at 5451.694 kb on - strand, within Echvi_4554 at 5451.773 kb on + strand, within Echvi_4554 at 5451.779 kb on + strand, within Echvi_4554 at 5451.779 kb on + strand, within Echvi_4554 at 5451.779 kb on + strand, within Echvi_4554 at 5451.780 kb on - strand, within Echvi_4554 at 5451.822 kb on + strand, within Echvi_4554 at 5451.823 kb on - strand, within Echvi_4554 at 5451.823 kb on - strand, within Echvi_4554 at 5451.850 kb on + strand, within Echvi_4554 at 5451.851 kb on - strand, within Echvi_4554 at 5451.851 kb on - strand, within Echvi_4554 at 5451.904 kb on + strand, within Echvi_4554 at 5451.905 kb on - strand, within Echvi_4554 at 5451.960 kb on - strand, within Echvi_4554 at 5451.973 kb on - strand, within Echvi_4554 at 5451.974 kb on + strand, within Echvi_4554 at 5451.990 kb on - strand, within Echvi_4554 at 5452.061 kb on + strand, within Echvi_4554 at 5452.061 kb on + strand, within Echvi_4554 at 5452.061 kb on + strand, within Echvi_4554 at 5452.062 kb on - strand, within Echvi_4554 at 5452.093 kb on + strand, within Echvi_4554 at 5452.248 kb on - strand, within Echvi_4554 at 5452.253 kb on - strand, within Echvi_4554 at 5452.330 kb on + strand, within Echvi_4554 at 5452.331 kb on - strand, within Echvi_4554 at 5452.331 kb on - strand, within Echvi_4554 at 5452.510 kb on - strand, within Echvi_4554 at 5452.551 kb on - strand, within Echvi_4554 at 5452.551 kb on - strand, within Echvi_4554 at 5452.554 kb on + strand, within Echvi_4554 at 5452.555 kb on - strand, within Echvi_4554 at 5452.598 kb on + strand, within Echvi_4554 at 5452.598 kb on + strand, within Echvi_4554 at 5452.735 kb on - strand, within Echvi_4554 at 5452.735 kb on - strand, within Echvi_4554 at 5452.899 kb on + strand at 5453.011 kb on + strand at 5453.153 kb on + strand at 5453.163 kb on - strand at 5453.166 kb on + strand at 5453.166 kb on + strand at 5453.167 kb on - strand at 5453.190 kb on - strand at 5453.196 kb on + strand at 5453.196 kb on + strand at 5453.197 kb on - strand at 5453.197 kb on - strand at 5453.303 kb on + strand at 5453.309 kb on - strand at 5453.344 kb on + strand at 5453.344 kb on + strand at 5453.344 kb on + strand at 5453.358 kb on + strand at 5453.382 kb on + strand at 5453.407 kb on - strand at 5453.407 kb on - strand at 5453.410 kb on - strand at 5453.554 kb on + strand, within Echvi_4555 at 5453.555 kb on - strand, within Echvi_4555 at 5453.556 kb on + strand, within Echvi_4555 at 5453.556 kb on + strand, within Echvi_4555 at 5453.556 kb on + strand, within Echvi_4555 at 5453.557 kb on - strand, within Echvi_4555 at 5453.581 kb on + strand, within Echvi_4555 at 5453.654 kb on + strand, within Echvi_4555 at 5453.665 kb on + strand, within Echvi_4555 at 5453.665 kb on + strand, within Echvi_4555 at 5453.666 kb on - strand, within Echvi_4555 at 5453.666 kb on - strand, within Echvi_4555 at 5453.669 kb on + strand, within Echvi_4555 at 5453.669 kb on + strand, within Echvi_4555 at 5453.669 kb on + strand, within Echvi_4555 at 5453.669 kb on + strand, within Echvi_4555 at 5453.669 kb on + strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.670 kb on - strand, within Echvi_4555 at 5453.703 kb on + strand, within Echvi_4555 at 5453.704 kb on - strand, within Echvi_4555 at 5453.704 kb on - strand, within Echvi_4555 at 5453.704 kb on - strand, within Echvi_4555 at 5453.704 kb on - strand, within Echvi_4555 at 5453.735 kb on + strand, within Echvi_4555 at 5453.736 kb on - strand, within Echvi_4555 at 5453.742 kb on + strand, within Echvi_4555 at 5453.745 kb on + strand, within Echvi_4555 at 5453.746 kb on - strand, within Echvi_4555 at 5453.872 kb on - strand, within Echvi_4555 at 5453.872 kb on - strand, within Echvi_4555 at 5453.872 kb on - strand, within Echvi_4555 at 5453.905 kb on + strand, within Echvi_4555 at 5453.905 kb on + strand, within Echvi_4555 at 5453.906 kb on - strand, within Echvi_4555 at 5453.979 kb on + strand, within Echvi_4555 at 5453.979 kb on + strand, within Echvi_4555 at 5454.028 kb on + strand, within Echvi_4555 at 5454.029 kb on - strand, within Echvi_4555 at 5454.029 kb on - strand, within Echvi_4555 at 5454.029 kb on - strand, within Echvi_4555 at 5454.030 kb on + strand, within Echvi_4555 at 5454.030 kb on + strand, within Echvi_4555 at 5454.030 kb on + strand, within Echvi_4555 at 5454.030 kb on + strand, within Echvi_4555 at 5454.031 kb on - strand, within Echvi_4555 at 5454.031 kb on - strand, within Echvi_4555 at 5454.031 kb on - strand, within Echvi_4555
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 5,449,813 + Echvi_4552 0.87 +1.1 5,449,895 + Echvi_4552 0.90 -0.2 5,449,895 + Echvi_4552 0.90 +0.8 5,449,896 - Echvi_4552 0.90 -0.8 5,449,912 + +1.5 5,449,912 + +1.2 5,450,065 - +0.3 5,450,065 - +0.9 5,450,144 + -0.3 5,450,145 - -0.3 5,450,183 + -0.0 5,450,263 + -0.6 5,450,263 + -0.2 5,450,318 + +0.0 5,450,323 + +1.5 5,450,323 + +1.1 5,450,324 - -0.0 5,450,329 - +0.4 5,450,329 - -0.3 5,450,382 + Echvi_4553 0.14 -0.3 5,450,423 - Echvi_4553 0.23 -1.0 5,450,442 - Echvi_4553 0.27 +1.8 5,450,563 - Echvi_4553 0.53 -0.7 5,450,601 + Echvi_4553 0.61 +1.2 5,450,784 + +1.3 5,450,784 + -0.4 5,450,784 + -0.1 5,450,784 + -1.0 5,450,784 + -0.7 5,450,784 + -0.6 5,450,784 + -0.3 5,450,784 + +0.1 5,450,785 - +0.4 5,450,785 - +0.0 5,450,785 - -1.4 5,450,785 - +1.2 5,450,785 - +0.8 5,450,786 + +1.0 5,450,786 + +1.0 5,450,794 + -0.6 5,451,007 + +1.1 5,451,037 + Echvi_4554 0.11 +0.3 5,451,038 - Echvi_4554 0.11 -0.8 5,451,090 - Echvi_4554 0.13 +0.0 5,451,094 - Echvi_4554 0.13 +0.6 5,451,094 - Echvi_4554 0.13 -0.2 5,451,097 - Echvi_4554 0.13 +0.8 5,451,135 + Echvi_4554 0.15 +0.7 5,451,135 + Echvi_4554 0.15 +1.1 5,451,135 + Echvi_4554 0.15 +0.3 5,451,171 - Echvi_4554 0.17 +1.4 5,451,176 + Echvi_4554 0.17 -1.5 5,451,176 + Echvi_4554 0.17 -0.0 5,451,176 + Echvi_4554 0.17 +0.5 5,451,176 + Echvi_4554 0.17 -0.8 5,451,176 + Echvi_4554 0.17 -0.9 5,451,177 - Echvi_4554 0.17 -0.0 5,451,177 - Echvi_4554 0.17 -0.0 5,451,211 - Echvi_4554 0.18 +0.6 5,451,264 + Echvi_4554 0.21 +1.8 5,451,264 + Echvi_4554 0.21 -0.2 5,451,265 - Echvi_4554 0.21 -0.4 5,451,266 + Echvi_4554 0.21 -0.3 5,451,267 - Echvi_4554 0.21 +1.0 5,451,327 - Echvi_4554 0.24 +0.1 5,451,331 - Echvi_4554 0.24 -0.8 5,451,345 - Echvi_4554 0.24 +0.2 5,451,468 - Echvi_4554 0.30 +0.7 5,451,655 + Echvi_4554 0.38 -2.0 5,451,677 + Echvi_4554 0.39 +0.0 5,451,678 - Echvi_4554 0.39 -0.6 5,451,678 - Echvi_4554 0.39 +1.3 5,451,694 - Echvi_4554 0.40 -0.8 5,451,694 - Echvi_4554 0.40 +1.2 5,451,694 - Echvi_4554 0.40 +0.0 5,451,773 + Echvi_4554 0.44 +1.2 5,451,779 + Echvi_4554 0.44 -0.7 5,451,779 + Echvi_4554 0.44 +0.9 5,451,779 + Echvi_4554 0.44 -0.8 5,451,780 - Echvi_4554 0.44 -0.1 5,451,822 + Echvi_4554 0.46 +0.9 5,451,823 - Echvi_4554 0.46 +0.1 5,451,823 - Echvi_4554 0.46 +0.8 5,451,850 + Echvi_4554 0.47 +0.1 5,451,851 - Echvi_4554 0.47 +0.4 5,451,851 - Echvi_4554 0.47 -0.4 5,451,904 + Echvi_4554 0.49 +0.3 5,451,905 - Echvi_4554 0.50 -0.2 5,451,960 - Echvi_4554 0.52 +0.8 5,451,973 - Echvi_4554 0.53 -0.1 5,451,974 + Echvi_4554 0.53 +0.5 5,451,990 - Echvi_4554 0.53 +1.7 5,452,061 + Echvi_4554 0.56 -2.4 5,452,061 + Echvi_4554 0.56 -0.5 5,452,061 + Echvi_4554 0.56 -0.7 5,452,062 - Echvi_4554 0.57 +1.2 5,452,093 + Echvi_4554 0.58 +2.4 5,452,248 - Echvi_4554 0.65 +3.1 5,452,253 - Echvi_4554 0.65 +1.6 5,452,330 + Echvi_4554 0.69 -0.9 5,452,331 - Echvi_4554 0.69 -1.0 5,452,331 - Echvi_4554 0.69 -0.0 5,452,510 - Echvi_4554 0.77 -1.7 5,452,551 - Echvi_4554 0.78 -1.0 5,452,551 - Echvi_4554 0.78 +0.7 5,452,554 + Echvi_4554 0.79 +0.2 5,452,555 - Echvi_4554 0.79 +0.6 5,452,598 + Echvi_4554 0.81 -0.1 5,452,598 + Echvi_4554 0.81 +1.8 5,452,735 - Echvi_4554 0.87 +1.8 5,452,735 - Echvi_4554 0.87 -0.5 5,452,899 + -0.1 5,453,011 + -2.0 5,453,153 + +0.8 5,453,163 - -1.1 5,453,166 + -0.8 5,453,166 + +0.0 5,453,167 - +0.5 5,453,190 - +0.3 5,453,196 + -0.2 5,453,196 + -0.3 5,453,197 - -0.3 5,453,197 - +0.3 5,453,303 + -0.0 5,453,309 - -0.5 5,453,344 + +0.0 5,453,344 + +0.8 5,453,344 + +0.3 5,453,358 + -0.7 5,453,382 + -0.1 5,453,407 - -0.9 5,453,407 - +0.1 5,453,410 - +0.3 5,453,554 + Echvi_4555 0.24 -0.0 5,453,555 - Echvi_4555 0.24 -0.2 5,453,556 + Echvi_4555 0.24 -0.8 5,453,556 + Echvi_4555 0.24 +0.6 5,453,556 + Echvi_4555 0.24 +0.1 5,453,557 - Echvi_4555 0.24 -0.1 5,453,581 + Echvi_4555 0.27 +0.1 5,453,654 + Echvi_4555 0.37 +0.1 5,453,665 + Echvi_4555 0.38 -0.3 5,453,665 + Echvi_4555 0.38 -2.0 5,453,666 - Echvi_4555 0.38 +0.8 5,453,666 - Echvi_4555 0.38 +0.6 5,453,669 + Echvi_4555 0.39 -1.7 5,453,669 + Echvi_4555 0.39 -0.3 5,453,669 + Echvi_4555 0.39 -0.5 5,453,669 + Echvi_4555 0.39 -0.1 5,453,669 + Echvi_4555 0.39 -0.0 5,453,670 - Echvi_4555 0.39 -0.1 5,453,670 - Echvi_4555 0.39 -0.1 5,453,670 - Echvi_4555 0.39 -2.5 5,453,670 - Echvi_4555 0.39 +1.4 5,453,670 - Echvi_4555 0.39 +0.1 5,453,670 - Echvi_4555 0.39 +0.6 5,453,670 - Echvi_4555 0.39 +0.9 5,453,670 - Echvi_4555 0.39 +0.8 5,453,670 - Echvi_4555 0.39 -0.2 5,453,703 + Echvi_4555 0.43 +1.2 5,453,704 - Echvi_4555 0.43 -0.3 5,453,704 - Echvi_4555 0.43 -0.5 5,453,704 - Echvi_4555 0.43 +0.0 5,453,704 - Echvi_4555 0.43 +0.1 5,453,735 + Echvi_4555 0.47 +0.6 5,453,736 - Echvi_4555 0.47 +0.6 5,453,742 + Echvi_4555 0.48 -0.1 5,453,745 + Echvi_4555 0.48 -1.5 5,453,746 - Echvi_4555 0.49 -0.4 5,453,872 - Echvi_4555 0.65 -0.3 5,453,872 - Echvi_4555 0.65 -1.2 5,453,872 - Echvi_4555 0.65 +0.7 5,453,905 + Echvi_4555 0.69 +0.3 5,453,905 + Echvi_4555 0.69 -1.8 5,453,906 - Echvi_4555 0.69 +2.0 5,453,979 + Echvi_4555 0.79 -0.7 5,453,979 + Echvi_4555 0.79 +0.4 5,454,028 + Echvi_4555 0.85 -0.4 5,454,029 - Echvi_4555 0.85 +1.1 5,454,029 - Echvi_4555 0.85 +0.8 5,454,029 - Echvi_4555 0.85 -0.2 5,454,030 + Echvi_4555 0.85 +0.5 5,454,030 + Echvi_4555 0.85 +1.4 5,454,030 + Echvi_4555 0.85 -1.3 5,454,030 + Echvi_4555 0.85 -0.9 5,454,031 - Echvi_4555 0.85 +1.2 5,454,031 - Echvi_4555 0.85 -1.5 5,454,031 - Echvi_4555 0.85 -1.0
Or see this region's nucleotide sequence