Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0866

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0865 and Echvi_0866 are separated by 404 nucleotidesEchvi_0866 and Echvi_0867 are separated by 79 nucleotides Echvi_0864: Echvi_0864 - hypothetical protein, at 986,920 to 987,156 _0864 Echvi_0865: Echvi_0865 - RNA polymerase sigma factor, sigma-70 family, at 987,131 to 987,733 _0865 Echvi_0866: Echvi_0866 - hypothetical protein, at 988,138 to 988,773 _0866 Echvi_0867: Echvi_0867 - uvrA paralog in Bacteroidetes (from data), at 988,853 to 991,669 _0867 Position (kb) 988 989Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 987.156 kb on + strandat 987.156 kb on + strandat 987.157 kb on - strandat 987.168 kb on - strandat 987.168 kb on - strandat 987.236 kb on + strand, within Echvi_0865at 987.236 kb on + strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.237 kb on - strand, within Echvi_0865at 987.277 kb on + strand, within Echvi_0865at 987.277 kb on + strand, within Echvi_0865at 987.277 kb on + strand, within Echvi_0865at 987.279 kb on + strand, within Echvi_0865at 987.279 kb on + strand, within Echvi_0865at 987.279 kb on + strand, within Echvi_0865at 987.279 kb on + strand, within Echvi_0865at 987.280 kb on - strand, within Echvi_0865at 987.280 kb on - strand, within Echvi_0865at 987.280 kb on - strand, within Echvi_0865at 987.280 kb on - strand, within Echvi_0865at 987.328 kb on + strand, within Echvi_0865at 987.339 kb on - strand, within Echvi_0865at 987.403 kb on + strand, within Echvi_0865at 987.403 kb on + strand, within Echvi_0865at 987.404 kb on - strand, within Echvi_0865at 987.433 kb on + strand, within Echvi_0865at 987.465 kb on + strand, within Echvi_0865at 987.471 kb on - strand, within Echvi_0865at 987.471 kb on - strand, within Echvi_0865at 987.527 kb on - strand, within Echvi_0865at 987.527 kb on - strand, within Echvi_0865at 987.528 kb on + strand, within Echvi_0865at 987.554 kb on - strand, within Echvi_0865at 987.566 kb on + strand, within Echvi_0865at 987.567 kb on - strand, within Echvi_0865at 987.605 kb on + strand, within Echvi_0865at 987.606 kb on - strand, within Echvi_0865at 987.608 kb on + strand, within Echvi_0865at 987.608 kb on + strand, within Echvi_0865at 987.608 kb on + strand, within Echvi_0865at 987.608 kb on + strand, within Echvi_0865at 987.609 kb on - strand, within Echvi_0865at 987.613 kb on + strand, within Echvi_0865at 987.613 kb on + strand, within Echvi_0865at 987.613 kb on + strand, within Echvi_0865at 987.613 kb on + strand, within Echvi_0865at 987.614 kb on - strand, within Echvi_0865at 987.614 kb on - strand, within Echvi_0865at 987.614 kb on - strand, within Echvi_0865at 987.616 kb on - strand, within Echvi_0865at 987.616 kb on - strand, within Echvi_0865at 987.640 kb on + strand, within Echvi_0865at 987.640 kb on + strand, within Echvi_0865at 987.640 kb on + strand, within Echvi_0865at 987.641 kb on - strandat 987.642 kb on + strand, within Echvi_0865at 987.642 kb on + strand, within Echvi_0865at 987.643 kb on - strand, within Echvi_0865at 987.646 kb on + strand, within Echvi_0865at 987.646 kb on + strand, within Echvi_0865at 987.646 kb on + strand, within Echvi_0865at 987.647 kb on - strand, within Echvi_0865at 987.647 kb on - strand, within Echvi_0865at 987.647 kb on - strand, within Echvi_0865at 987.650 kb on + strand, within Echvi_0865at 987.650 kb on + strand, within Echvi_0865at 987.651 kb on - strand, within Echvi_0865at 987.651 kb on - strand, within Echvi_0865at 987.751 kb on + strandat 987.771 kb on + strandat 987.784 kb on - strandat 987.797 kb on + strandat 987.798 kb on - strandat 988.066 kb on + strandat 988.111 kb on - strandat 988.175 kb on + strandat 988.191 kb on - strandat 988.200 kb on + strandat 988.200 kb on + strandat 988.200 kb on + strandat 988.200 kb on + strandat 988.230 kb on + strand, within Echvi_0866at 988.232 kb on + strand, within Echvi_0866at 988.232 kb on + strand, within Echvi_0866at 988.232 kb on + strand, within Echvi_0866at 988.239 kb on + strand, within Echvi_0866at 988.281 kb on + strand, within Echvi_0866at 988.282 kb on - strand, within Echvi_0866at 988.289 kb on + strand, within Echvi_0866at 988.290 kb on - strand, within Echvi_0866at 988.308 kb on - strand, within Echvi_0866at 988.362 kb on + strand, within Echvi_0866at 988.363 kb on - strand, within Echvi_0866at 988.391 kb on - strand, within Echvi_0866at 988.406 kb on - strand, within Echvi_0866at 988.434 kb on + strand, within Echvi_0866at 988.438 kb on + strand, within Echvi_0866at 988.451 kb on - strand, within Echvi_0866at 988.452 kb on + strand, within Echvi_0866at 988.452 kb on + strand, within Echvi_0866at 988.453 kb on - strand, within Echvi_0866at 988.453 kb on - strand, within Echvi_0866at 988.457 kb on + strand, within Echvi_0866at 988.457 kb on + strand, within Echvi_0866at 988.458 kb on - strand, within Echvi_0866at 988.468 kb on - strand, within Echvi_0866at 988.537 kb on - strand, within Echvi_0866at 988.551 kb on - strand, within Echvi_0866at 988.569 kb on + strand, within Echvi_0866at 988.569 kb on + strand, within Echvi_0866at 988.569 kb on + strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.570 kb on - strand, within Echvi_0866at 988.648 kb on - strand, within Echvi_0866at 988.687 kb on + strand, within Echvi_0866at 988.688 kb on - strand, within Echvi_0866at 988.694 kb on + strand, within Echvi_0866at 988.694 kb on + strand, within Echvi_0866at 988.694 kb on + strand, within Echvi_0866at 988.695 kb on - strand, within Echvi_0866at 988.695 kb on - strand, within Echvi_0866at 988.697 kb on - strand, within Echvi_0866at 988.697 kb on - strand, within Echvi_0866at 988.704 kb on - strand, within Echvi_0866at 988.717 kb on + strandat 988.717 kb on + strandat 988.718 kb on - strandat 988.718 kb on - strandat 988.725 kb on + strandat 988.761 kb on - strandat 988.840 kb on - strandat 988.847 kb on + strandat 988.848 kb on - strandat 988.848 kb on - strandat 988.852 kb on + strandat 988.911 kb on - strandat 988.911 kb on - strandat 988.911 kb on - strandat 988.912 kb on + strandat 988.912 kb on + strandat 988.912 kb on + strandat 988.912 kb on + strandat 988.912 kb on + strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 988.913 kb on - strandat 989.012 kb on - strandat 989.037 kb on + strandat 989.037 kb on + strandat 989.038 kb on - strandat 989.038 kb on - strandat 989.081 kb on + strandat 989.082 kb on - strandat 989.121 kb on + strandat 989.122 kb on - strandat 989.122 kb on - strandat 989.122 kb on - strandat 989.126 kb on + strandat 989.127 kb on - strandat 989.216 kb on + strand, within Echvi_0867at 989.216 kb on + strand, within Echvi_0867at 989.216 kb on + strand, within Echvi_0867at 989.217 kb on - strand, within Echvi_0867at 989.217 kb on - strand, within Echvi_0867at 989.217 kb on - strand, within Echvi_0867at 989.284 kb on - strand, within Echvi_0867at 989.294 kb on - strand, within Echvi_0867at 989.294 kb on - strand, within Echvi_0867at 989.294 kb on - strand, within Echvi_0867at 989.317 kb on + strand, within Echvi_0867at 989.346 kb on + strand, within Echvi_0867at 989.406 kb on + strand, within Echvi_0867at 989.407 kb on - strand, within Echvi_0867at 989.454 kb on - strand, within Echvi_0867at 989.457 kb on - strand, within Echvi_0867at 989.502 kb on + strand, within Echvi_0867at 989.503 kb on - strand, within Echvi_0867at 989.701 kb on + strand, within Echvi_0867at 989.717 kb on + strand, within Echvi_0867at 989.718 kb on - strand, within Echvi_0867at 989.763 kb on + strand, within Echvi_0867at 989.764 kb on - strand, within Echvi_0867

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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987,156 + +0.4
987,156 + -0.3
987,157 - +0.9
987,168 - -1.0
987,168 - +1.9
987,236 + Echvi_0865 0.17 +0.6
987,236 + Echvi_0865 0.17 -1.4
987,237 - Echvi_0865 0.18 +0.5
987,237 - Echvi_0865 0.18 +0.3
987,237 - Echvi_0865 0.18 -0.2
987,237 - Echvi_0865 0.18 +0.3
987,237 - Echvi_0865 0.18 -0.7
987,237 - Echvi_0865 0.18 -1.3
987,277 + Echvi_0865 0.24 +0.3
987,277 + Echvi_0865 0.24 +0.5
987,277 + Echvi_0865 0.24 +3.9
987,279 + Echvi_0865 0.25 +0.8
987,279 + Echvi_0865 0.25 +0.1
987,279 + Echvi_0865 0.25 +0.2
987,279 + Echvi_0865 0.25 -0.2
987,280 - Echvi_0865 0.25 -0.2
987,280 - Echvi_0865 0.25 -0.1
987,280 - Echvi_0865 0.25 -1.2
987,280 - Echvi_0865 0.25 -0.1
987,328 + Echvi_0865 0.33 +0.0
987,339 - Echvi_0865 0.34 -0.0
987,403 + Echvi_0865 0.45 +0.7
987,403 + Echvi_0865 0.45 -0.4
987,404 - Echvi_0865 0.45 +0.1
987,433 + Echvi_0865 0.50 -0.4
987,465 + Echvi_0865 0.55 +0.2
987,471 - Echvi_0865 0.56 -0.4
987,471 - Echvi_0865 0.56 -0.6
987,527 - Echvi_0865 0.66 +0.3
987,527 - Echvi_0865 0.66 +0.6
987,528 + Echvi_0865 0.66 +2.3
987,554 - Echvi_0865 0.70 +0.3
987,566 + Echvi_0865 0.72 -0.2
987,567 - Echvi_0865 0.72 -0.3
987,605 + Echvi_0865 0.79 +0.1
987,606 - Echvi_0865 0.79 +0.5
987,608 + Echvi_0865 0.79 -0.1
987,608 + Echvi_0865 0.79 -0.1
987,608 + Echvi_0865 0.79 +1.1
987,608 + Echvi_0865 0.79 +0.3
987,609 - Echvi_0865 0.79 -0.5
987,613 + Echvi_0865 0.80 -0.4
987,613 + Echvi_0865 0.80 +1.9
987,613 + Echvi_0865 0.80 +1.0
987,613 + Echvi_0865 0.80 +0.9
987,614 - Echvi_0865 0.80 -0.1
987,614 - Echvi_0865 0.80 +0.9
987,614 - Echvi_0865 0.80 -1.0
987,616 - Echvi_0865 0.80 +0.0
987,616 - Echvi_0865 0.80 -0.4
987,640 + Echvi_0865 0.84 +1.4
987,640 + Echvi_0865 0.84 -0.5
987,640 + Echvi_0865 0.84 -0.1
987,641 - +1.3
987,642 + Echvi_0865 0.85 -0.7
987,642 + Echvi_0865 0.85 -1.1
987,643 - Echvi_0865 0.85 -0.7
987,646 + Echvi_0865 0.85 +0.7
987,646 + Echvi_0865 0.85 -0.6
987,646 + Echvi_0865 0.85 +0.5
987,647 - Echvi_0865 0.86 -0.3
987,647 - Echvi_0865 0.86 +0.0
987,647 - Echvi_0865 0.86 -1.8
987,650 + Echvi_0865 0.86 +0.6
987,650 + Echvi_0865 0.86 -0.5
987,651 - Echvi_0865 0.86 -1.5
987,651 - Echvi_0865 0.86 +0.1
987,751 + -0.6
987,771 + +0.6
987,784 - -0.9
987,797 + +1.9
987,798 - +0.2
988,066 + +0.1
988,111 - -0.3
988,175 + -0.4
988,191 - +1.3
988,200 + -0.2
988,200 + +2.3
988,200 + +0.4
988,200 + +0.1
988,230 + Echvi_0866 0.14 +0.3
988,232 + Echvi_0866 0.15 +0.8
988,232 + Echvi_0866 0.15 -0.4
988,232 + Echvi_0866 0.15 +1.2
988,239 + Echvi_0866 0.16 +0.7
988,281 + Echvi_0866 0.22 +0.3
988,282 - Echvi_0866 0.23 +0.2
988,289 + Echvi_0866 0.24 +1.7
988,290 - Echvi_0866 0.24 +0.1
988,308 - Echvi_0866 0.27 +0.4
988,362 + Echvi_0866 0.35 +0.0
988,363 - Echvi_0866 0.35 +0.9
988,391 - Echvi_0866 0.40 +0.2
988,406 - Echvi_0866 0.42 -0.9
988,434 + Echvi_0866 0.47 -0.3
988,438 + Echvi_0866 0.47 -0.6
988,451 - Echvi_0866 0.49 -0.7
988,452 + Echvi_0866 0.49 +0.6
988,452 + Echvi_0866 0.49 -0.5
988,453 - Echvi_0866 0.50 +0.1
988,453 - Echvi_0866 0.50 +0.2
988,457 + Echvi_0866 0.50 +1.4
988,457 + Echvi_0866 0.50 -0.3
988,458 - Echvi_0866 0.50 -0.5
988,468 - Echvi_0866 0.52 +0.5
988,537 - Echvi_0866 0.63 -0.1
988,551 - Echvi_0866 0.65 +0.3
988,569 + Echvi_0866 0.68 +0.3
988,569 + Echvi_0866 0.68 -0.0
988,569 + Echvi_0866 0.68 +2.3
988,570 - Echvi_0866 0.68 -1.4
988,570 - Echvi_0866 0.68 -0.2
988,570 - Echvi_0866 0.68 -0.2
988,570 - Echvi_0866 0.68 +0.6
988,570 - Echvi_0866 0.68 +1.3
988,570 - Echvi_0866 0.68 +0.3
988,648 - Echvi_0866 0.80 +1.9
988,687 + Echvi_0866 0.86 -1.0
988,688 - Echvi_0866 0.86 +0.5
988,694 + Echvi_0866 0.87 +0.3
988,694 + Echvi_0866 0.87 +1.2
988,694 + Echvi_0866 0.87 -0.2
988,695 - Echvi_0866 0.88 -0.4
988,695 - Echvi_0866 0.88 -0.4
988,697 - Echvi_0866 0.88 -0.3
988,697 - Echvi_0866 0.88 -0.3
988,704 - Echvi_0866 0.89 +0.1
988,717 + +0.5
988,717 + -0.2
988,718 - +0.1
988,718 - -2.0
988,725 + +0.8
988,761 - -1.9
988,840 - -0.1
988,847 + +0.9
988,848 - +0.6
988,848 - +0.2
988,852 + -2.1
988,911 - +2.1
988,911 - +0.1
988,911 - -1.2
988,912 + -0.4
988,912 + +0.3
988,912 + +0.5
988,912 + +1.2
988,912 + +0.5
988,913 - +0.1
988,913 - -0.3
988,913 - +0.7
988,913 - +0.5
988,913 - +0.3
988,913 - -0.1
988,913 - -1.3
988,913 - -0.9
988,913 - -0.0
988,913 - -0.4
988,913 - -1.7
989,012 - +0.9
989,037 + +0.6
989,037 + -1.6
989,038 - -0.8
989,038 - +1.2
989,081 + -0.6
989,082 - +1.6
989,121 + +0.3
989,122 - -0.3
989,122 - +0.0
989,122 - -0.3
989,126 + -0.6
989,127 - -1.0
989,216 + Echvi_0867 0.13 +0.7
989,216 + Echvi_0867 0.13 +1.3
989,216 + Echvi_0867 0.13 +1.0
989,217 - Echvi_0867 0.13 +0.4
989,217 - Echvi_0867 0.13 -0.7
989,217 - Echvi_0867 0.13 +1.3
989,284 - Echvi_0867 0.15 +0.5
989,294 - Echvi_0867 0.16 -0.3
989,294 - Echvi_0867 0.16 -0.5
989,294 - Echvi_0867 0.16 +1.9
989,317 + Echvi_0867 0.16 -0.5
989,346 + Echvi_0867 0.18 +0.6
989,406 + Echvi_0867 0.20 +0.5
989,407 - Echvi_0867 0.20 -1.9
989,454 - Echvi_0867 0.21 +0.3
989,457 - Echvi_0867 0.21 +0.1
989,502 + Echvi_0867 0.23 +0.1
989,503 - Echvi_0867 0.23 +0.0
989,701 + Echvi_0867 0.30 -0.1
989,717 + Echvi_0867 0.31 -0.0
989,718 - Echvi_0867 0.31 -0.3
989,763 + Echvi_0867 0.32 +0.6
989,764 - Echvi_0867 0.32 +1.0

Or see this region's nucleotide sequence