Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0463 and Echvi_0464 are separated by 41 nucleotides Echvi_0464 and Echvi_0465 are separated by 333 nucleotides
Echvi_0463: Echvi_0463 - Zinc metalloprotease (elastase), at 506,088 to 508,676
_0463
Echvi_0464: Echvi_0464 - Protein of unknown function (DUF2726)., at 508,718 to 509,575
_0464
Echvi_0465: Echvi_0465 - hypothetical protein, at 509,909 to 511,240
_0465
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 507.743 kb on + strand, within Echvi_0463 at 507.744 kb on - strand, within Echvi_0463 at 507.769 kb on + strand, within Echvi_0463 at 507.793 kb on - strand, within Echvi_0463 at 507.836 kb on + strand, within Echvi_0463 at 507.836 kb on + strand, within Echvi_0463 at 507.837 kb on - strand, within Echvi_0463 at 507.838 kb on + strand, within Echvi_0463 at 507.838 kb on + strand, within Echvi_0463 at 507.839 kb on - strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.884 kb on + strand, within Echvi_0463 at 507.885 kb on - strand, within Echvi_0463 at 507.885 kb on - strand, within Echvi_0463 at 507.885 kb on - strand, within Echvi_0463 at 507.885 kb on - strand, within Echvi_0463 at 507.885 kb on - strand, within Echvi_0463 at 507.888 kb on - strand, within Echvi_0463 at 507.990 kb on + strand, within Echvi_0463 at 507.990 kb on + strand, within Echvi_0463 at 507.990 kb on + strand, within Echvi_0463 at 508.013 kb on + strand, within Echvi_0463 at 508.013 kb on + strand, within Echvi_0463 at 508.014 kb on - strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.017 kb on + strand, within Echvi_0463 at 508.018 kb on - strand, within Echvi_0463 at 508.018 kb on - strand, within Echvi_0463 at 508.018 kb on - strand, within Echvi_0463 at 508.018 kb on - strand, within Echvi_0463 at 508.019 kb on + strand, within Echvi_0463 at 508.019 kb on + strand, within Echvi_0463 at 508.019 kb on + strand, within Echvi_0463 at 508.069 kb on + strand, within Echvi_0463 at 508.070 kb on - strand, within Echvi_0463 at 508.104 kb on + strand, within Echvi_0463 at 508.105 kb on - strand, within Echvi_0463 at 508.110 kb on + strand, within Echvi_0463 at 508.110 kb on + strand, within Echvi_0463 at 508.111 kb on - strand, within Echvi_0463 at 508.111 kb on - strand, within Echvi_0463 at 508.140 kb on + strand, within Echvi_0463 at 508.140 kb on + strand, within Echvi_0463 at 508.140 kb on + strand, within Echvi_0463 at 508.140 kb on + strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.141 kb on - strand, within Echvi_0463 at 508.142 kb on + strand, within Echvi_0463 at 508.143 kb on - strand, within Echvi_0463 at 508.151 kb on + strand, within Echvi_0463 at 508.152 kb on - strand, within Echvi_0463 at 508.157 kb on + strand, within Echvi_0463 at 508.158 kb on - strand, within Echvi_0463 at 508.161 kb on - strand, within Echvi_0463 at 508.165 kb on + strand, within Echvi_0463 at 508.178 kb on - strand, within Echvi_0463 at 508.178 kb on - strand, within Echvi_0463 at 508.179 kb on + strand, within Echvi_0463 at 508.198 kb on + strand, within Echvi_0463 at 508.198 kb on + strand, within Echvi_0463 at 508.198 kb on + strand, within Echvi_0463 at 508.198 kb on + strand, within Echvi_0463 at 508.205 kb on - strand, within Echvi_0463 at 508.208 kb on - strand, within Echvi_0463 at 508.228 kb on + strand, within Echvi_0463 at 508.229 kb on - strand, within Echvi_0463 at 508.259 kb on + strand, within Echvi_0463 at 508.263 kb on + strand, within Echvi_0463 at 508.318 kb on - strand, within Echvi_0463 at 508.372 kb on - strand, within Echvi_0463 at 508.404 kb on + strand, within Echvi_0463 at 508.405 kb on - strand, within Echvi_0463 at 508.409 kb on + strand, within Echvi_0463 at 508.410 kb on - strand, within Echvi_0463 at 508.410 kb on - strand, within Echvi_0463 at 508.410 kb on - strand, within Echvi_0463 at 508.410 kb on - strand, within Echvi_0463 at 508.422 kb on + strand at 508.423 kb on - strand at 508.425 kb on - strand at 508.457 kb on - strand at 508.526 kb on - strand at 508.526 kb on - strand at 508.614 kb on + strand at 508.618 kb on - strand at 508.618 kb on - strand at 508.618 kb on - strand at 508.621 kb on + strand at 508.621 kb on + strand at 508.621 kb on + strand at 508.622 kb on - strand at 508.622 kb on - strand at 508.622 kb on - strand at 508.625 kb on + strand at 508.625 kb on + strand at 508.626 kb on - strand at 508.626 kb on - strand at 508.626 kb on - strand at 508.626 kb on - strand at 508.626 kb on - strand at 508.675 kb on - strand at 508.697 kb on - strand at 508.697 kb on - strand at 508.703 kb on + strand at 508.704 kb on - strand at 508.704 kb on - strand at 508.705 kb on + strand at 508.706 kb on - strand at 508.706 kb on - strand at 508.706 kb on - strand at 508.708 kb on + strand at 508.744 kb on + strand at 508.744 kb on + strand at 508.745 kb on - strand at 508.745 kb on - strand at 508.748 kb on + strand at 508.749 kb on - strand at 508.792 kb on + strand at 508.801 kb on + strand at 508.801 kb on + strand at 508.801 kb on + strand at 508.802 kb on - strand at 508.802 kb on - strand at 508.802 kb on - strand at 508.805 kb on + strand, within Echvi_0464 at 508.806 kb on - strand, within Echvi_0464 at 508.806 kb on - strand, within Echvi_0464 at 508.838 kb on + strand, within Echvi_0464 at 508.838 kb on + strand, within Echvi_0464 at 508.839 kb on - strand, within Echvi_0464 at 508.844 kb on - strand, within Echvi_0464 at 508.844 kb on - strand, within Echvi_0464 at 508.862 kb on + strand, within Echvi_0464 at 508.863 kb on - strand, within Echvi_0464 at 508.880 kb on - strand, within Echvi_0464 at 508.955 kb on + strand, within Echvi_0464 at 508.995 kb on - strand, within Echvi_0464 at 508.995 kb on - strand, within Echvi_0464 at 508.995 kb on - strand, within Echvi_0464 at 508.995 kb on - strand, within Echvi_0464 at 509.026 kb on + strand, within Echvi_0464 at 509.026 kb on + strand, within Echvi_0464 at 509.026 kb on + strand, within Echvi_0464 at 509.026 kb on + strand, within Echvi_0464 at 509.027 kb on - strand, within Echvi_0464 at 509.069 kb on + strand, within Echvi_0464 at 509.078 kb on + strand, within Echvi_0464 at 509.140 kb on - strand, within Echvi_0464 at 509.144 kb on + strand, within Echvi_0464 at 509.145 kb on - strand, within Echvi_0464 at 509.195 kb on - strand, within Echvi_0464 at 509.221 kb on - strand, within Echvi_0464 at 509.225 kb on + strand, within Echvi_0464 at 509.243 kb on + strand, within Echvi_0464 at 509.244 kb on - strand, within Echvi_0464 at 509.259 kb on + strand, within Echvi_0464 at 509.263 kb on - strand, within Echvi_0464 at 509.271 kb on + strand, within Echvi_0464 at 509.271 kb on + strand, within Echvi_0464 at 509.271 kb on + strand, within Echvi_0464 at 509.272 kb on - strand, within Echvi_0464 at 509.272 kb on - strand, within Echvi_0464 at 509.275 kb on + strand, within Echvi_0464 at 509.275 kb on + strand, within Echvi_0464 at 509.275 kb on + strand, within Echvi_0464 at 509.275 kb on + strand, within Echvi_0464 at 509.276 kb on - strand, within Echvi_0464 at 509.366 kb on + strand, within Echvi_0464 at 509.422 kb on + strand, within Echvi_0464 at 509.429 kb on + strand, within Echvi_0464 at 509.434 kb on + strand, within Echvi_0464 at 509.434 kb on + strand, within Echvi_0464 at 509.450 kb on - strand, within Echvi_0464 at 509.489 kb on - strand, within Echvi_0464 at 509.503 kb on - strand at 509.506 kb on - strand at 509.506 kb on - strand at 509.554 kb on - strand at 509.554 kb on - strand at 509.582 kb on - strand at 509.587 kb on + strand at 509.624 kb on + strand at 509.624 kb on + strand at 509.632 kb on + strand at 509.644 kb on + strand at 509.675 kb on + strand at 509.688 kb on + strand at 509.688 kb on + strand at 509.713 kb on + strand at 509.960 kb on - strand at 510.008 kb on + strand at 510.011 kb on - strand at 510.032 kb on + strand at 510.033 kb on - strand at 510.033 kb on - strand at 510.065 kb on + strand, within Echvi_0465 at 510.066 kb on - strand, within Echvi_0465 at 510.109 kb on - strand, within Echvi_0465 at 510.133 kb on + strand, within Echvi_0465 at 510.134 kb on - strand, within Echvi_0465 at 510.185 kb on - strand, within Echvi_0465 at 510.185 kb on - strand, within Echvi_0465 at 510.206 kb on - strand, within Echvi_0465 at 510.257 kb on - strand, within Echvi_0465 at 510.257 kb on - strand, within Echvi_0465 at 510.257 kb on - strand, within Echvi_0465 at 510.257 kb on - strand, within Echvi_0465 at 510.257 kb on - strand, within Echvi_0465 at 510.306 kb on - strand, within Echvi_0465 at 510.383 kb on - strand, within Echvi_0465 at 510.436 kb on - strand, within Echvi_0465 at 510.436 kb on - strand, within Echvi_0465 at 510.464 kb on - strand, within Echvi_0465 at 510.464 kb on - strand, within Echvi_0465 at 510.545 kb on - strand, within Echvi_0465 at 510.550 kb on - strand, within Echvi_0465 at 510.554 kb on - strand, within Echvi_0465
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 507,743 + Echvi_0463 0.64 +0.3 507,744 - Echvi_0463 0.64 +2.2 507,769 + Echvi_0463 0.65 +0.5 507,793 - Echvi_0463 0.66 +0.1 507,836 + Echvi_0463 0.68 +2.9 507,836 + Echvi_0463 0.68 -0.2 507,837 - Echvi_0463 0.68 -1.1 507,838 + Echvi_0463 0.68 -0.9 507,838 + Echvi_0463 0.68 +0.4 507,839 - Echvi_0463 0.68 -0.4 507,884 + Echvi_0463 0.69 +0.3 507,884 + Echvi_0463 0.69 +1.1 507,884 + Echvi_0463 0.69 +0.5 507,884 + Echvi_0463 0.69 -0.1 507,884 + Echvi_0463 0.69 -0.3 507,884 + Echvi_0463 0.69 +0.4 507,884 + Echvi_0463 0.69 -0.5 507,884 + Echvi_0463 0.69 +0.9 507,885 - Echvi_0463 0.69 +0.9 507,885 - Echvi_0463 0.69 -1.3 507,885 - Echvi_0463 0.69 +0.6 507,885 - Echvi_0463 0.69 +0.9 507,885 - Echvi_0463 0.69 -0.7 507,888 - Echvi_0463 0.70 -1.5 507,990 + Echvi_0463 0.73 +0.9 507,990 + Echvi_0463 0.73 -1.3 507,990 + Echvi_0463 0.73 +0.2 508,013 + Echvi_0463 0.74 -0.1 508,013 + Echvi_0463 0.74 +1.2 508,014 - Echvi_0463 0.74 +0.8 508,017 + Echvi_0463 0.75 -0.0 508,017 + Echvi_0463 0.75 -1.2 508,017 + Echvi_0463 0.75 +1.4 508,017 + Echvi_0463 0.75 +2.5 508,017 + Echvi_0463 0.75 -0.0 508,017 + Echvi_0463 0.75 -0.9 508,018 - Echvi_0463 0.75 -0.4 508,018 - Echvi_0463 0.75 +0.3 508,018 - Echvi_0463 0.75 +0.9 508,018 - Echvi_0463 0.75 -0.1 508,019 + Echvi_0463 0.75 +0.6 508,019 + Echvi_0463 0.75 +0.4 508,019 + Echvi_0463 0.75 +0.0 508,069 + Echvi_0463 0.77 -1.1 508,070 - Echvi_0463 0.77 +1.2 508,104 + Echvi_0463 0.78 +0.7 508,105 - Echvi_0463 0.78 +0.4 508,110 + Echvi_0463 0.78 -1.1 508,110 + Echvi_0463 0.78 +0.3 508,111 - Echvi_0463 0.78 -1.1 508,111 - Echvi_0463 0.78 -1.1 508,140 + Echvi_0463 0.79 -1.3 508,140 + Echvi_0463 0.79 +0.1 508,140 + Echvi_0463 0.79 +0.5 508,140 + Echvi_0463 0.79 -1.2 508,141 - Echvi_0463 0.79 -0.4 508,141 - Echvi_0463 0.79 -0.1 508,141 - Echvi_0463 0.79 +0.9 508,141 - Echvi_0463 0.79 -0.4 508,141 - Echvi_0463 0.79 +0.4 508,141 - Echvi_0463 0.79 +0.1 508,141 - Echvi_0463 0.79 +0.2 508,142 + Echvi_0463 0.79 -0.6 508,143 - Echvi_0463 0.79 -0.5 508,151 + Echvi_0463 0.80 -0.4 508,152 - Echvi_0463 0.80 -0.3 508,157 + Echvi_0463 0.80 +0.4 508,158 - Echvi_0463 0.80 +0.5 508,161 - Echvi_0463 0.80 -1.6 508,165 + Echvi_0463 0.80 -0.1 508,178 - Echvi_0463 0.81 -0.0 508,178 - Echvi_0463 0.81 +0.3 508,179 + Echvi_0463 0.81 -1.0 508,198 + Echvi_0463 0.81 -0.0 508,198 + Echvi_0463 0.81 +1.9 508,198 + Echvi_0463 0.81 -0.1 508,198 + Echvi_0463 0.81 +1.0 508,205 - Echvi_0463 0.82 +0.2 508,208 - Echvi_0463 0.82 -0.1 508,228 + Echvi_0463 0.83 +1.1 508,229 - Echvi_0463 0.83 +0.5 508,259 + Echvi_0463 0.84 -0.4 508,263 + Echvi_0463 0.84 +0.9 508,318 - Echvi_0463 0.86 -0.7 508,372 - Echvi_0463 0.88 -0.2 508,404 + Echvi_0463 0.89 +0.9 508,405 - Echvi_0463 0.89 +0.2 508,409 + Echvi_0463 0.90 +1.4 508,410 - Echvi_0463 0.90 +1.9 508,410 - Echvi_0463 0.90 +0.8 508,410 - Echvi_0463 0.90 -0.3 508,410 - Echvi_0463 0.90 +0.6 508,422 + +0.3 508,423 - -0.4 508,425 - +0.8 508,457 - -0.6 508,526 - -0.1 508,526 - +2.6 508,614 + -0.1 508,618 - +0.2 508,618 - -0.7 508,618 - -0.5 508,621 + -1.0 508,621 + +0.7 508,621 + -0.9 508,622 - +0.9 508,622 - -0.7 508,622 - -1.8 508,625 + -0.6 508,625 + -0.6 508,626 - -0.6 508,626 - -0.5 508,626 - +0.5 508,626 - -0.5 508,626 - -0.3 508,675 - -0.0 508,697 - +0.2 508,697 - -0.0 508,703 + -1.0 508,704 - +0.3 508,704 - +3.9 508,705 + -0.1 508,706 - -0.7 508,706 - +0.1 508,706 - -0.0 508,708 + -0.5 508,744 + -0.5 508,744 + -0.1 508,745 - -0.0 508,745 - +0.4 508,748 + -0.0 508,749 - -1.1 508,792 + -0.7 508,801 + -0.4 508,801 + -0.0 508,801 + -0.3 508,802 - -1.7 508,802 - -0.1 508,802 - -1.3 508,805 + Echvi_0464 0.10 +1.9 508,806 - Echvi_0464 0.10 +0.5 508,806 - Echvi_0464 0.10 -0.5 508,838 + Echvi_0464 0.14 +0.1 508,838 + Echvi_0464 0.14 -1.3 508,839 - Echvi_0464 0.14 -0.6 508,844 - Echvi_0464 0.15 +0.1 508,844 - Echvi_0464 0.15 +0.9 508,862 + Echvi_0464 0.17 -0.3 508,863 - Echvi_0464 0.17 -0.9 508,880 - Echvi_0464 0.19 -0.9 508,955 + Echvi_0464 0.28 +0.5 508,995 - Echvi_0464 0.32 +0.6 508,995 - Echvi_0464 0.32 -0.1 508,995 - Echvi_0464 0.32 -0.8 508,995 - Echvi_0464 0.32 +0.2 509,026 + Echvi_0464 0.36 -0.5 509,026 + Echvi_0464 0.36 +0.5 509,026 + Echvi_0464 0.36 -0.0 509,026 + Echvi_0464 0.36 +0.4 509,027 - Echvi_0464 0.36 +0.4 509,069 + Echvi_0464 0.41 -0.3 509,078 + Echvi_0464 0.42 +0.8 509,140 - Echvi_0464 0.49 +0.9 509,144 + Echvi_0464 0.50 +0.5 509,145 - Echvi_0464 0.50 -1.3 509,195 - Echvi_0464 0.56 +0.7 509,221 - Echvi_0464 0.59 -0.2 509,225 + Echvi_0464 0.59 +0.0 509,243 + Echvi_0464 0.61 -0.6 509,244 - Echvi_0464 0.61 -0.7 509,259 + Echvi_0464 0.63 -1.3 509,263 - Echvi_0464 0.64 -1.5 509,271 + Echvi_0464 0.64 +1.2 509,271 + Echvi_0464 0.64 +0.4 509,271 + Echvi_0464 0.64 +0.8 509,272 - Echvi_0464 0.65 -0.7 509,272 - Echvi_0464 0.65 -0.2 509,275 + Echvi_0464 0.65 -0.1 509,275 + Echvi_0464 0.65 +0.6 509,275 + Echvi_0464 0.65 -0.1 509,275 + Echvi_0464 0.65 +0.2 509,276 - Echvi_0464 0.65 +1.5 509,366 + Echvi_0464 0.76 +0.8 509,422 + Echvi_0464 0.82 +1.5 509,429 + Echvi_0464 0.83 -1.1 509,434 + Echvi_0464 0.83 +0.7 509,434 + Echvi_0464 0.83 +0.8 509,450 - Echvi_0464 0.85 -0.7 509,489 - Echvi_0464 0.90 -0.1 509,503 - -0.8 509,506 - -0.8 509,506 - -1.1 509,554 - -0.8 509,554 - -0.7 509,582 - -0.1 509,587 + +0.7 509,624 + +0.1 509,624 + +0.6 509,632 + +0.4 509,644 + +1.2 509,675 + +1.3 509,688 + +0.1 509,688 + -0.0 509,713 + -0.4 509,960 - +1.9 510,008 + -0.8 510,011 - +0.1 510,032 + -1.5 510,033 - -0.4 510,033 - +0.1 510,065 + Echvi_0465 0.12 +0.9 510,066 - Echvi_0465 0.12 +0.3 510,109 - Echvi_0465 0.15 -1.0 510,133 + Echvi_0465 0.17 -0.7 510,134 - Echvi_0465 0.17 -0.5 510,185 - Echvi_0465 0.21 -0.2 510,185 - Echvi_0465 0.21 +0.2 510,206 - Echvi_0465 0.22 -0.4 510,257 - Echvi_0465 0.26 +1.3 510,257 - Echvi_0465 0.26 +0.8 510,257 - Echvi_0465 0.26 -1.3 510,257 - Echvi_0465 0.26 -0.0 510,257 - Echvi_0465 0.26 -1.5 510,306 - Echvi_0465 0.30 -0.1 510,383 - Echvi_0465 0.36 +0.1 510,436 - Echvi_0465 0.40 +0.0 510,436 - Echvi_0465 0.40 +0.3 510,464 - Echvi_0465 0.42 +0.1 510,464 - Echvi_0465 0.42 -2.2 510,545 - Echvi_0465 0.48 +0.2 510,550 - Echvi_0465 0.48 +0.8 510,554 - Echvi_0465 0.48 -1.4
Or see this region's nucleotide sequence