Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29030

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29025 and ABID97_RS29030 are separated by 21 nucleotidesABID97_RS29030 and ABID97_RS29035 are separated by 26 nucleotides ABID97_RS29025: ABID97_RS29025 - 3-isopropylmalate dehydratase large subunit, at 722,891 to 724,312 _RS29025 ABID97_RS29030: ABID97_RS29030 - 3-isopropylmalate dehydratase small subunit, at 724,334 to 724,936 _RS29030 ABID97_RS29035: ABID97_RS29035 - 3-isopropylmalate dehydrogenase, at 724,963 to 726,042 _RS29035 Position (kb) 724 725Strain fitness (log2 ratio) -2 -1 0 1at 723.872 kb on + strand, within ABID97_RS29025at 724.454 kb on + strand, within ABID97_RS29030at 724.970 kb on + strandat 724.971 kb on - strandat 725.375 kb on - strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035at 725.782 kb on + strand, within ABID97_RS29035

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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723,872 + ABID97_RS29025 0.69 -0.7
724,454 + ABID97_RS29030 0.20 -2.0
724,970 + +0.3
724,971 - -0.4
725,375 - ABID97_RS29035 0.38 -1.7
725,782 + ABID97_RS29035 0.76 -1.1
725,782 + ABID97_RS29035 0.76 -0.9
725,782 + ABID97_RS29035 0.76 +0.5

Or see this region's nucleotide sequence