Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28735

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28730 and ABID97_RS28735 overlap by 4 nucleotidesABID97_RS28735 and ABID97_RS28740 are separated by 91 nucleotides ABID97_RS28730: ABID97_RS28730 - PAS domain-containing sensor histidine kinase, at 662,432 to 663,580 _RS28730 ABID97_RS28735: ABID97_RS28735 - alpha/beta hydrolase, at 663,577 to 664,392 _RS28735 ABID97_RS28740: ABID97_RS28740 - NADH:flavin oxidoreductase/NADH oxidase, at 664,484 to 665,599 _RS28740 Position (kb) 663 664 665Strain fitness (log2 ratio) -1 0 1at 662.740 kb on - strand, within ABID97_RS28730at 662.740 kb on - strand, within ABID97_RS28730at 663.213 kb on + strand, within ABID97_RS28730at 663.716 kb on + strand, within ABID97_RS28735at 663.716 kb on + strand, within ABID97_RS28735at 663.716 kb on + strand, within ABID97_RS28735at 663.716 kb on + strand, within ABID97_RS28735at 663.947 kb on + strand, within ABID97_RS28735at 663.948 kb on - strand, within ABID97_RS28735at 664.026 kb on - strand, within ABID97_RS28735at 664.026 kb on - strand, within ABID97_RS28735at 664.211 kb on + strand, within ABID97_RS28735at 664.614 kb on + strand, within ABID97_RS28740at 664.758 kb on + strand, within ABID97_RS28740at 664.759 kb on - strand, within ABID97_RS28740at 665.053 kb on - strand, within ABID97_RS28740

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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662,740 - ABID97_RS28730 0.27 +0.1
662,740 - ABID97_RS28730 0.27 -0.2
663,213 + ABID97_RS28730 0.68 -0.0
663,716 + ABID97_RS28735 0.17 +0.6
663,716 + ABID97_RS28735 0.17 +0.5
663,716 + ABID97_RS28735 0.17 -0.6
663,716 + ABID97_RS28735 0.17 -0.3
663,947 + ABID97_RS28735 0.45 +0.7
663,948 - ABID97_RS28735 0.45 +1.1
664,026 - ABID97_RS28735 0.55 -1.0
664,026 - ABID97_RS28735 0.55 +0.2
664,211 + ABID97_RS28735 0.78 +0.5
664,614 + ABID97_RS28740 0.12 -0.3
664,758 + ABID97_RS28740 0.25 +1.3
664,759 - ABID97_RS28740 0.25 -0.3
665,053 - ABID97_RS28740 0.51 +0.9

Or see this region's nucleotide sequence