Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28360

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28355 and ABID97_RS28360 overlap by 4 nucleotidesABID97_RS28360 and ABID97_RS28365 are separated by 80 nucleotides ABID97_RS28355: ABID97_RS28355 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 591,291 to 592,334 _RS28355 ABID97_RS28360: ABID97_RS28360 - isochorismatase family protein, at 592,331 to 592,972 _RS28360 ABID97_RS28365: ABID97_RS28365 - ABC transporter substrate-binding protein, at 593,053 to 594,231 _RS28365 Position (kb) 592 593Strain fitness (log2 ratio) -1 0 1at 591.650 kb on - strand, within ABID97_RS28355at 593.254 kb on + strand, within ABID97_RS28365at 593.400 kb on - strand, within ABID97_RS28365at 593.400 kb on - strand, within ABID97_RS28365at 593.470 kb on + strand, within ABID97_RS28365at 593.870 kb on - strand, within ABID97_RS28365

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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591,650 - ABID97_RS28355 0.34 +0.5
593,254 + ABID97_RS28365 0.17 -0.8
593,400 - ABID97_RS28365 0.29 -0.2
593,400 - ABID97_RS28365 0.29 +0.0
593,470 + ABID97_RS28365 0.35 +0.9
593,870 - ABID97_RS28365 0.69 -0.0

Or see this region's nucleotide sequence