Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28310

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28300 and ABID97_RS28305 are separated by 1 nucleotidesABID97_RS28305 and ABID97_RS28310 are separated by 84 nucleotidesABID97_RS28310 and ABID97_RS28315 are separated by 1 nucleotides ABID97_RS28300: ABID97_RS28300 - acyl-CoA dehydrogenase, at 578,783 to 580,573 _RS28300 ABID97_RS28305: ABID97_RS28305 - MarR family winged helix-turn-helix transcriptional regulator, at 580,575 to 581,102 _RS28305 ABID97_RS28310: ABID97_RS28310 - alpha/beta hydrolase, at 581,187 to 581,993 _RS28310 ABID97_RS28315: ABID97_RS28315 - 2Fe-2S iron-sulfur cluster-binding protein, at 581,995 to 583,212 _RS28315 Position (kb) 581 582Strain fitness (log2 ratio) -1 0 1 2 3at 580.938 kb on + strand, within ABID97_RS28305at 581.388 kb on + strand, within ABID97_RS28310at 581.389 kb on - strand, within ABID97_RS28310at 581.456 kb on + strand, within ABID97_RS28310at 581.456 kb on + strand, within ABID97_RS28310at 582.216 kb on - strand, within ABID97_RS28315

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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580,938 + ABID97_RS28305 0.69 +2.8
581,388 + ABID97_RS28310 0.25 +1.3
581,389 - ABID97_RS28310 0.25 +1.1
581,456 + ABID97_RS28310 0.33 +2.2
581,456 + ABID97_RS28310 0.33 +1.2
582,216 - ABID97_RS28315 0.18 -0.3

Or see this region's nucleotide sequence