Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28005

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27995 and ABID97_RS28000 are separated by 47 nucleotidesABID97_RS28000 and ABID97_RS28005 are separated by 40 nucleotidesABID97_RS28005 and ABID97_RS28010 overlap by 8 nucleotidesABID97_RS28010 and ABID97_RS28015 overlap by 8 nucleotidesABID97_RS28015 and ABID97_RS28020 overlap by 11 nucleotides ABID97_RS27995: ABID97_RS27995 - VOC family protein, at 517,700 to 518,707 _RS27995 ABID97_RS28000: ABID97_RS28000 - NADPH-dependent FMN reductase, at 518,755 to 519,342 _RS28000 ABID97_RS28005: ABID97_RS28005 - phosphopyruvate hydratase, at 519,383 to 520,462 _RS28005 ABID97_RS28010: ABID97_RS28010 - hypothetical protein, at 520,455 to 520,676 _RS28010 ABID97_RS28015: ABID97_RS28015 - cupin domain-containing protein, at 520,669 to 521,280 _RS28015 ABID97_RS28020: ABID97_RS28020 - ABC transporter ATP-binding protein, at 521,270 to 521,977 _RS28020 Position (kb) 519 520 521Strain fitness (log2 ratio) -2 -1 0 1at 518.611 kb on - strandat 519.204 kb on - strand, within ABID97_RS28000at 519.916 kb on - strand, within ABID97_RS28005at 520.119 kb on + strand, within ABID97_RS28005at 521.361 kb on + strand, within ABID97_RS28020at 521.362 kb on - strand, within ABID97_RS28020

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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518,611 - -1.0
519,204 - ABID97_RS28000 0.76 -0.8
519,916 - ABID97_RS28005 0.49 -0.6
520,119 + ABID97_RS28005 0.68 -1.9
521,361 + ABID97_RS28020 0.13 -0.8
521,362 - ABID97_RS28020 0.13 -0.7

Or see this region's nucleotide sequence