Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27340 and ABID97_RS27345 are separated by 7 nucleotides ABID97_RS27345 and ABID97_RS27350 are separated by 206 nucleotides ABID97_RS27350 and ABID97_RS27355 are separated by 9 nucleotides
ABID97_RS27340: ABID97_RS27340 - CocE/NonD family hydrolase, at 384,297 to 386,582
_RS27340
ABID97_RS27345: ABID97_RS27345 - alpha-amylase family glycosyl hydrolase, at 386,590 to 388,212
_RS27345
ABID97_RS27350: ABID97_RS27350 - glutathione S-transferase family protein, at 388,419 to 389,081
_RS27350
ABID97_RS27355: ABID97_RS27355 - RraA family protein, at 389,091 to 389,762
_RS27355
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -1
0
1 at 385.659 kb on + strand, within ABID97_RS27340 at 385.839 kb on + strand, within ABID97_RS27340 at 385.839 kb on + strand, within ABID97_RS27340 at 385.905 kb on + strand, within ABID97_RS27340 at 386.299 kb on - strand, within ABID97_RS27340 at 386.316 kb on + strand, within ABID97_RS27340 at 386.473 kb on - strand at 387.267 kb on - strand, within ABID97_RS27345 at 387.509 kb on + strand, within ABID97_RS27345 at 387.662 kb on + strand, within ABID97_RS27345 at 387.663 kb on - strand, within ABID97_RS27345 at 387.734 kb on + strand, within ABID97_RS27345 at 387.734 kb on + strand, within ABID97_RS27345 at 387.735 kb on - strand, within ABID97_RS27345 at 387.834 kb on - strand, within ABID97_RS27345 at 388.049 kb on + strand, within ABID97_RS27345 at 388.050 kb on - strand at 388.175 kb on + strand at 388.175 kb on + strand at 388.188 kb on - strand at 388.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 385,659 + ABID97_RS27340 0.60 +0.5 385,839 + ABID97_RS27340 0.67 +0.2 385,839 + ABID97_RS27340 0.67 -0.5 385,905 + ABID97_RS27340 0.70 -0.3 386,299 - ABID97_RS27340 0.88 +0.8 386,316 + ABID97_RS27340 0.88 -0.1 386,473 - +0.7 387,267 - ABID97_RS27345 0.42 +0.9 387,509 + ABID97_RS27345 0.57 -0.0 387,662 + ABID97_RS27345 0.66 +0.7 387,663 - ABID97_RS27345 0.66 -0.2 387,734 + ABID97_RS27345 0.70 +1.7 387,734 + ABID97_RS27345 0.70 +0.4 387,735 - ABID97_RS27345 0.71 +0.1 387,834 - ABID97_RS27345 0.77 -0.0 388,049 + ABID97_RS27345 0.90 -0.0 388,050 - +0.4 388,175 + -1.3 388,175 + +0.0 388,188 - -0.5 388,188 - +0.3
Or see this region's nucleotide sequence