Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26975 and ABID97_RS26980 are separated by 103 nucleotides ABID97_RS26980 and ABID97_RS26985 are separated by 28 nucleotides
ABID97_RS26975: ABID97_RS26975 - LysR substrate-binding domain-containing protein, at 315,384 to 316,283
_RS26975
ABID97_RS26980: ABID97_RS26980 - mandelate racemase/muconate lactonizing enzyme family protein, at 316,387 to 317,553
_RS26980
ABID97_RS26985: ABID97_RS26985 - tripartite tricarboxylate transporter substrate binding protein BugD, at 317,582 to 318,559
_RS26985
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1 at 315.685 kb on + strand, within ABID97_RS26975 at 315.685 kb on + strand, within ABID97_RS26975 at 316.303 kb on + strand at 316.303 kb on + strand at 316.304 kb on - strand at 316.447 kb on + strand at 316.447 kb on + strand at 316.852 kb on + strand, within ABID97_RS26980 at 316.852 kb on + strand, within ABID97_RS26980 at 316.853 kb on - strand, within ABID97_RS26980 at 316.900 kb on + strand, within ABID97_RS26980 at 316.901 kb on - strand, within ABID97_RS26980 at 316.917 kb on + strand, within ABID97_RS26980 at 316.918 kb on - strand, within ABID97_RS26980 at 317.081 kb on - strand, within ABID97_RS26980 at 317.834 kb on + strand, within ABID97_RS26985 at 317.883 kb on - strand, within ABID97_RS26985 at 318.122 kb on + strand, within ABID97_RS26985 at 318.342 kb on - strand, within ABID97_RS26985 at 318.342 kb on - strand, within ABID97_RS26985
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 315,685 + ABID97_RS26975 0.33 +1.4 315,685 + ABID97_RS26975 0.33 -0.6 316,303 + -0.2 316,303 + -0.4 316,304 - +0.3 316,447 + +1.2 316,447 + +1.6 316,852 + ABID97_RS26980 0.40 -0.5 316,852 + ABID97_RS26980 0.40 +0.7 316,853 - ABID97_RS26980 0.40 -0.1 316,900 + ABID97_RS26980 0.44 -0.4 316,901 - ABID97_RS26980 0.44 -0.4 316,917 + ABID97_RS26980 0.45 +0.0 316,918 - ABID97_RS26980 0.46 -1.5 317,081 - ABID97_RS26980 0.59 -0.3 317,834 + ABID97_RS26985 0.26 -1.1 317,883 - ABID97_RS26985 0.31 -1.4 318,122 + ABID97_RS26985 0.55 -0.0 318,342 - ABID97_RS26985 0.78 +0.2 318,342 - ABID97_RS26985 0.78 +0.1
Or see this region's nucleotide sequence