Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26840

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26830 and ABID97_RS26835 are separated by 22 nucleotidesABID97_RS26835 and ABID97_RS26840 are separated by 270 nucleotidesABID97_RS26840 and ABID97_RS26845 are separated by 286 nucleotides ABID97_RS26830: ABID97_RS26830 - hypothetical protein, at 289,812 to 290,081 _RS26830 ABID97_RS26835: ABID97_RS26835 - DUF1629 domain-containing protein, at 290,104 to 290,682 _RS26835 ABID97_RS26840: ABID97_RS26840 - hypothetical protein, at 290,953 to 291,168 _RS26840 ABID97_RS26845: ABID97_RS26845 - carotenoid oxygenase family protein, at 291,455 to 292,885 _RS26845 Position (kb) 290 291 292Strain fitness (log2 ratio) -1 0 1at 290.388 kb on - strand, within ABID97_RS26835at 290.398 kb on + strand, within ABID97_RS26835at 290.884 kb on + strandat 290.885 kb on - strandat 291.139 kb on - strand, within ABID97_RS26840at 291.178 kb on + strandat 291.736 kb on - strand, within ABID97_RS26845

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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290,388 - ABID97_RS26835 0.49 +1.7
290,398 + ABID97_RS26835 0.51 -0.5
290,884 + -0.4
290,885 - -0.5
291,139 - ABID97_RS26840 0.86 -1.1
291,178 + -0.2
291,736 - ABID97_RS26845 0.20 -0.5

Or see this region's nucleotide sequence