Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26465 and ABID97_RS26470 overlap by 1 nucleotides ABID97_RS26470 and ABID97_RS26475 overlap by 4 nucleotides ABID97_RS26475 and ABID97_RS26480 overlap by 23 nucleotides
ABID97_RS26465: ABID97_RS26465 - cytochrome c oxidase subunit II, at 211,363 to 212,328
_RS26465
ABID97_RS26470: ABID97_RS26470 - c-type cytochrome, at 212,328 to 212,888
_RS26470
ABID97_RS26475: ABID97_RS26475 - substrate-binding domain-containing protein, at 212,885 to 213,727
_RS26475
ABID97_RS26480: ABID97_RS26480 - methanol/ethanol family PQQ-dependent dehydrogenase, at 213,705 to 215,519
_RS26480
Position (kb) 212
213 Strain fitness (log2 ratio) -1
0
1 at 211.433 kb on + strand at 211.433 kb on + strand at 211.434 kb on - strand at 211.434 kb on - strand at 211.772 kb on + strand, within ABID97_RS26465 at 212.668 kb on + strand, within ABID97_RS26470 at 213.385 kb on - strand, within ABID97_RS26475 at 213.385 kb on - strand, within ABID97_RS26475 at 213.396 kb on + strand, within ABID97_RS26475 at 213.514 kb on - strand, within ABID97_RS26475 at 213.727 kb on + strand at 213.728 kb on - strand at 213.871 kb on + strand at 213.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 211,433 + -0.6 211,433 + -0.3 211,434 - +0.8 211,434 - +0.6 211,772 + ABID97_RS26465 0.42 +0.5 212,668 + ABID97_RS26470 0.61 -0.4 213,385 - ABID97_RS26475 0.59 +1.2 213,385 - ABID97_RS26475 0.59 -0.3 213,396 + ABID97_RS26475 0.61 -0.5 213,514 - ABID97_RS26475 0.75 -0.0 213,727 + -0.9 213,728 - +0.5 213,871 + -1.2 213,872 - -0.1
Or see this region's nucleotide sequence