Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25585 and ABID97_RS25590 are separated by 12 nucleotides ABID97_RS25590 and ABID97_RS25595 overlap by 20 nucleotides ABID97_RS25595 and ABID97_RS25600 overlap by 4 nucleotides ABID97_RS25600 and ABID97_RS25605 are separated by 16 nucleotides
ABID97_RS25585: ABID97_RS25585 - DUF6662 family protein, at 36,837 to 37,754
_RS25585
ABID97_RS25590: ABID97_RS25590 - FMN-binding protein, at 37,767 to 38,282
_RS25590
ABID97_RS25595: ABID97_RS25595 - FAD:protein FMN transferase, at 38,263 to 39,168
_RS25595
ABID97_RS25600: ABID97_RS25600 - hypothetical protein, at 39,165 to 39,626
_RS25600
ABID97_RS25605: ABID97_RS25605 - GGDEF domain-containing protein, at 39,643 to 41,103
_RS25605
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1
2 at 37.381 kb on - strand, within ABID97_RS25585 at 37.531 kb on - strand, within ABID97_RS25585 at 37.539 kb on + strand, within ABID97_RS25585 at 37.569 kb on + strand, within ABID97_RS25585 at 37.744 kb on - strand at 37.747 kb on - strand at 37.747 kb on - strand at 37.834 kb on - strand, within ABID97_RS25590 at 38.041 kb on - strand, within ABID97_RS25590 at 38.106 kb on + strand, within ABID97_RS25590 at 38.106 kb on + strand, within ABID97_RS25590 at 38.107 kb on - strand, within ABID97_RS25590 at 38.262 kb on + strand at 38.262 kb on + strand at 38.263 kb on - strand at 38.900 kb on - strand, within ABID97_RS25595 at 39.289 kb on - strand, within ABID97_RS25600 at 39.507 kb on + strand, within ABID97_RS25600 at 39.507 kb on + strand, within ABID97_RS25600 at 39.508 kb on - strand, within ABID97_RS25600 at 40.148 kb on + strand, within ABID97_RS25605
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 37,381 - ABID97_RS25585 0.59 -0.2 37,531 - ABID97_RS25585 0.76 +1.9 37,539 + ABID97_RS25585 0.76 +0.3 37,569 + ABID97_RS25585 0.80 +1.7 37,744 - -0.9 37,747 - +0.6 37,747 - -0.7 37,834 - ABID97_RS25590 0.13 +0.0 38,041 - ABID97_RS25590 0.53 -0.5 38,106 + ABID97_RS25590 0.66 +0.5 38,106 + ABID97_RS25590 0.66 -0.5 38,107 - ABID97_RS25590 0.66 +0.7 38,262 + +1.4 38,262 + +0.5 38,263 - -0.9 38,900 - ABID97_RS25595 0.70 +0.5 39,289 - ABID97_RS25600 0.27 +0.3 39,507 + ABID97_RS25600 0.74 -1.3 39,507 + ABID97_RS25600 0.74 -0.8 39,508 - ABID97_RS25600 0.74 -0.2 40,148 + ABID97_RS25605 0.35 -0.7
Or see this region's nucleotide sequence