Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24355 and ABID97_RS24360 are separated by 104 nucleotides ABID97_RS24360 and ABID97_RS24365 are separated by 82 nucleotides ABID97_RS24365 and ABID97_RS24370 are separated by 275 nucleotides ABID97_RS24370 and ABID97_RS24375 are separated by 19 nucleotides
ABID97_RS24355: ABID97_RS24355 - Mur ligase family protein, at 5,037,195 to 5,040,266
_RS24355
ABID97_RS24360: ABID97_RS24360 - peptidoglycan-associated lipoprotein Pal, at 5,040,371 to 5,040,871
_RS24360
ABID97_RS24365: ABID97_RS24365 - hypothetical protein, at 5,040,954 to 5,044,469
_RS24365
ABID97_RS24370: ABID97_RS24370 - DUF1841 family protein, at 5,044,745 to 5,045,179
_RS24370
ABID97_RS24375: ABID97_RS24375 - LysR substrate-binding domain-containing protein, at 5,045,199 to 5,046,194
_RS24375
Position (kb) 5040
5041
5042
5043
5044
5045 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5039.956 kb on + strand, within ABID97_RS24355 at 5039.956 kb on + strand, within ABID97_RS24355 at 5039.956 kb on + strand, within ABID97_RS24355 at 5039.957 kb on - strand, within ABID97_RS24355 at 5040.379 kb on - strand at 5040.546 kb on + strand, within ABID97_RS24360 at 5040.546 kb on + strand, within ABID97_RS24360 at 5040.546 kb on + strand, within ABID97_RS24360 at 5040.547 kb on - strand, within ABID97_RS24360 at 5040.547 kb on - strand, within ABID97_RS24360 at 5040.547 kb on - strand, within ABID97_RS24360 at 5040.547 kb on - strand, within ABID97_RS24360 at 5040.662 kb on + strand, within ABID97_RS24360 at 5040.663 kb on + strand, within ABID97_RS24360 at 5040.664 kb on - strand, within ABID97_RS24360 at 5040.664 kb on - strand, within ABID97_RS24360 at 5040.681 kb on + strand, within ABID97_RS24360 at 5040.681 kb on + strand, within ABID97_RS24360 at 5040.737 kb on + strand, within ABID97_RS24360 at 5040.768 kb on + strand, within ABID97_RS24360 at 5040.769 kb on - strand, within ABID97_RS24360 at 5040.771 kb on + strand, within ABID97_RS24360 at 5040.772 kb on - strand, within ABID97_RS24360 at 5040.772 kb on - strand, within ABID97_RS24360 at 5040.774 kb on + strand, within ABID97_RS24360 at 5040.774 kb on + strand, within ABID97_RS24360 at 5040.775 kb on - strand, within ABID97_RS24360 at 5040.775 kb on - strand, within ABID97_RS24360 at 5040.859 kb on - strand at 5040.945 kb on - strand at 5041.846 kb on + strand, within ABID97_RS24365 at 5041.846 kb on + strand, within ABID97_RS24365 at 5041.846 kb on + strand, within ABID97_RS24365 at 5041.846 kb on + strand, within ABID97_RS24365 at 5041.847 kb on - strand, within ABID97_RS24365 at 5041.847 kb on - strand, within ABID97_RS24365 at 5041.847 kb on - strand, within ABID97_RS24365 at 5043.145 kb on + strand, within ABID97_RS24365 at 5043.146 kb on - strand, within ABID97_RS24365 at 5043.146 kb on - strand, within ABID97_RS24365 at 5044.295 kb on + strand at 5044.296 kb on - strand at 5044.497 kb on + strand at 5044.497 kb on + strand at 5044.654 kb on - strand at 5044.661 kb on + strand at 5044.661 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.739 kb on - strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.744 kb on + strand at 5044.744 kb on + strand at 5044.744 kb on + strand at 5044.745 kb on - strand at 5044.745 kb on - strand at 5044.745 kb on - strand at 5044.793 kb on + strand, within ABID97_RS24370 at 5044.793 kb on + strand, within ABID97_RS24370 at 5044.794 kb on - strand, within ABID97_RS24370 at 5044.794 kb on - strand, within ABID97_RS24370 at 5044.916 kb on + strand, within ABID97_RS24370 at 5044.916 kb on + strand, within ABID97_RS24370 at 5044.917 kb on - strand, within ABID97_RS24370 at 5045.142 kb on - strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 5,039,956 + ABID97_RS24355 0.90 -1.5 5,039,956 + ABID97_RS24355 0.90 -1.1 5,039,956 + ABID97_RS24355 0.90 -0.2 5,039,957 - ABID97_RS24355 0.90 -0.3 5,040,379 - -0.6 5,040,546 + ABID97_RS24360 0.35 +2.9 5,040,546 + ABID97_RS24360 0.35 -1.9 5,040,546 + ABID97_RS24360 0.35 -0.1 5,040,547 - ABID97_RS24360 0.35 -0.9 5,040,547 - ABID97_RS24360 0.35 -1.2 5,040,547 - ABID97_RS24360 0.35 +0.2 5,040,547 - ABID97_RS24360 0.35 -0.0 5,040,662 + ABID97_RS24360 0.58 +0.7 5,040,663 + ABID97_RS24360 0.58 -1.6 5,040,664 - ABID97_RS24360 0.58 -0.4 5,040,664 - ABID97_RS24360 0.58 +0.2 5,040,681 + ABID97_RS24360 0.62 -0.3 5,040,681 + ABID97_RS24360 0.62 -0.0 5,040,737 + ABID97_RS24360 0.73 -0.8 5,040,768 + ABID97_RS24360 0.79 +0.7 5,040,769 - ABID97_RS24360 0.79 -0.2 5,040,771 + ABID97_RS24360 0.80 +0.5 5,040,772 - ABID97_RS24360 0.80 +0.3 5,040,772 - ABID97_RS24360 0.80 -0.5 5,040,774 + ABID97_RS24360 0.80 +0.4 5,040,774 + ABID97_RS24360 0.80 +1.0 5,040,775 - ABID97_RS24360 0.81 -0.9 5,040,775 - ABID97_RS24360 0.81 +0.4 5,040,859 - -0.5 5,040,945 - -0.6 5,041,846 + ABID97_RS24365 0.25 -0.6 5,041,846 + ABID97_RS24365 0.25 -1.4 5,041,846 + ABID97_RS24365 0.25 -0.4 5,041,846 + ABID97_RS24365 0.25 -0.1 5,041,847 - ABID97_RS24365 0.25 +1.2 5,041,847 - ABID97_RS24365 0.25 +0.3 5,041,847 - ABID97_RS24365 0.25 +1.7 5,043,145 + ABID97_RS24365 0.62 -0.8 5,043,146 - ABID97_RS24365 0.62 +0.1 5,043,146 - ABID97_RS24365 0.62 +0.6 5,044,295 + +0.7 5,044,296 - -0.8 5,044,497 + -2.2 5,044,497 + -0.8 5,044,654 - +0.0 5,044,661 + -1.0 5,044,661 + +0.9 5,044,738 + +0.7 5,044,738 + -0.4 5,044,738 + -0.9 5,044,738 + -0.4 5,044,739 - -1.2 5,044,740 + -0.3 5,044,740 + +0.1 5,044,740 + -0.1 5,044,740 + -0.7 5,044,740 + -0.5 5,044,740 + -0.0 5,044,740 + +1.3 5,044,740 + -1.1 5,044,740 + -0.2 5,044,741 - -0.4 5,044,741 - -0.4 5,044,741 - -0.1 5,044,741 - +0.6 5,044,741 - -0.8 5,044,741 - -0.7 5,044,741 - -0.0 5,044,741 - -0.6 5,044,741 - -0.3 5,044,741 - -1.1 5,044,744 + -0.1 5,044,744 + -1.4 5,044,744 + -0.0 5,044,745 - +0.4 5,044,745 - +1.4 5,044,745 - -0.4 5,044,793 + ABID97_RS24370 0.11 +1.6 5,044,793 + ABID97_RS24370 0.11 +2.2 5,044,794 - ABID97_RS24370 0.11 +1.3 5,044,794 - ABID97_RS24370 0.11 +1.7 5,044,916 + ABID97_RS24370 0.39 +1.0 5,044,916 + ABID97_RS24370 0.39 +1.6 5,044,917 - ABID97_RS24370 0.40 +2.7 5,045,142 - +2.6 5,045,177 + -0.2 5,045,177 + -0.4 5,045,177 + +0.0 5,045,177 + +1.2 5,045,178 - -1.3
Or see this region's nucleotide sequence