Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23960

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23945 and ABID97_RS23950 overlap by 4 nucleotidesABID97_RS23950 and ABID97_RS23955 are separated by 25 nucleotidesABID97_RS23955 and ABID97_RS23960 are separated by 32 nucleotidesABID97_RS23960 and ABID97_RS23965 are separated by 55 nucleotides ABID97_RS23945: ABID97_RS23945 - DUF2970 domain-containing protein, at 4,954,004 to 4,954,216 _RS23945 ABID97_RS23950: ABID97_RS23950 - cytochrome c oxidase assembly protein, at 4,954,213 to 4,954,839 _RS23950 ABID97_RS23955: ABID97_RS23955 - cytochrome oxidase small assembly protein, at 4,954,865 to 4,954,981 _RS23955 ABID97_RS23960: ABID97_RS23960 - cytochrome c oxidase subunit I, at 4,955,014 to 4,956,645 _RS23960 ABID97_RS23965: ABID97_RS23965 - cytochrome c oxidase subunit II, at 4,956,701 to 4,957,879 _RS23965 Position (kb) 4955 4956 4957Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 4954.024 kb on - strandat 4954.122 kb on + strand, within ABID97_RS23945at 4954.296 kb on - strand, within ABID97_RS23950at 4954.296 kb on - strand, within ABID97_RS23950at 4954.305 kb on + strand, within ABID97_RS23950at 4954.306 kb on - strand, within ABID97_RS23950at 4954.388 kb on + strand, within ABID97_RS23950at 4954.389 kb on - strand, within ABID97_RS23950at 4954.389 kb on - strand, within ABID97_RS23950at 4954.424 kb on + strand, within ABID97_RS23950at 4954.448 kb on + strand, within ABID97_RS23950at 4954.448 kb on + strand, within ABID97_RS23950at 4954.448 kb on + strand, within ABID97_RS23950at 4954.449 kb on - strand, within ABID97_RS23950at 4954.502 kb on + strand, within ABID97_RS23950at 4954.503 kb on - strand, within ABID97_RS23950at 4954.503 kb on - strand, within ABID97_RS23950at 4955.186 kb on + strand, within ABID97_RS23960at 4955.187 kb on - strand, within ABID97_RS23960at 4955.187 kb on - strand, within ABID97_RS23960at 4955.372 kb on + strand, within ABID97_RS23960at 4955.373 kb on - strand, within ABID97_RS23960at 4955.373 kb on - strand, within ABID97_RS23960at 4955.402 kb on + strand, within ABID97_RS23960at 4955.402 kb on + strand, within ABID97_RS23960at 4955.405 kb on + strand, within ABID97_RS23960at 4955.405 kb on + strand, within ABID97_RS23960at 4955.409 kb on - strand, within ABID97_RS23960at 4955.426 kb on + strand, within ABID97_RS23960at 4955.450 kb on + strand, within ABID97_RS23960at 4955.451 kb on - strand, within ABID97_RS23960at 4955.451 kb on - strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.471 kb on + strand, within ABID97_RS23960at 4955.472 kb on - strand, within ABID97_RS23960at 4955.472 kb on - strand, within ABID97_RS23960at 4955.472 kb on - strand, within ABID97_RS23960at 4955.474 kb on + strand, within ABID97_RS23960at 4955.474 kb on + strand, within ABID97_RS23960at 4955.474 kb on + strand, within ABID97_RS23960at 4955.475 kb on - strand, within ABID97_RS23960at 4955.475 kb on - strand, within ABID97_RS23960at 4955.667 kb on - strand, within ABID97_RS23960at 4955.762 kb on + strand, within ABID97_RS23960at 4955.891 kb on + strand, within ABID97_RS23960at 4955.891 kb on + strand, within ABID97_RS23960at 4955.892 kb on - strand, within ABID97_RS23960at 4955.892 kb on - strand, within ABID97_RS23960at 4956.005 kb on + strand, within ABID97_RS23960at 4956.005 kb on + strand, within ABID97_RS23960at 4956.188 kb on + strand, within ABID97_RS23960at 4956.189 kb on - strand, within ABID97_RS23960at 4956.189 kb on - strand, within ABID97_RS23960at 4956.518 kb on + strandat 4956.519 kb on - strandat 4956.519 kb on - strandat 4956.777 kb on + strandat 4956.777 kb on + strandat 4956.973 kb on - strand, within ABID97_RS23965at 4957.077 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.116 kb on + strand, within ABID97_RS23965at 4957.117 kb on - strand, within ABID97_RS23965at 4957.117 kb on - strand, within ABID97_RS23965at 4957.155 kb on + strand, within ABID97_RS23965at 4957.156 kb on - strand, within ABID97_RS23965at 4957.284 kb on - strand, within ABID97_RS23965at 4957.284 kb on - strand, within ABID97_RS23965at 4957.332 kb on + strand, within ABID97_RS23965at 4957.332 kb on + strand, within ABID97_RS23965at 4957.435 kb on - strand, within ABID97_RS23965at 4957.459 kb on - strand, within ABID97_RS23965

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,954,024 - -0.6
4,954,122 + ABID97_RS23945 0.55 -0.2
4,954,296 - ABID97_RS23950 0.13 +5.7
4,954,296 - ABID97_RS23950 0.13 +5.8
4,954,305 + ABID97_RS23950 0.15 +5.7
4,954,306 - ABID97_RS23950 0.15 +5.5
4,954,388 + ABID97_RS23950 0.28 +5.5
4,954,389 - ABID97_RS23950 0.28 +5.2
4,954,389 - ABID97_RS23950 0.28 +5.6
4,954,424 + ABID97_RS23950 0.34 +5.6
4,954,448 + ABID97_RS23950 0.37 +5.5
4,954,448 + ABID97_RS23950 0.37 +5.7
4,954,448 + ABID97_RS23950 0.37 +5.5
4,954,449 - ABID97_RS23950 0.38 +5.9
4,954,502 + ABID97_RS23950 0.46 +5.4
4,954,503 - ABID97_RS23950 0.46 +5.7
4,954,503 - ABID97_RS23950 0.46 +5.0
4,955,186 + ABID97_RS23960 0.11 +6.1
4,955,187 - ABID97_RS23960 0.11 +5.7
4,955,187 - ABID97_RS23960 0.11 +5.9
4,955,372 + ABID97_RS23960 0.22 +6.2
4,955,373 - ABID97_RS23960 0.22 +5.8
4,955,373 - ABID97_RS23960 0.22 +5.8
4,955,402 + ABID97_RS23960 0.24 +6.1
4,955,402 + ABID97_RS23960 0.24 +7.1
4,955,405 + ABID97_RS23960 0.24 +6.1
4,955,405 + ABID97_RS23960 0.24 +6.3
4,955,409 - ABID97_RS23960 0.24 +5.5
4,955,426 + ABID97_RS23960 0.25 +5.9
4,955,450 + ABID97_RS23960 0.27 +5.6
4,955,451 - ABID97_RS23960 0.27 +5.9
4,955,451 - ABID97_RS23960 0.27 +6.1
4,955,471 + ABID97_RS23960 0.28 +6.1
4,955,471 + ABID97_RS23960 0.28 +6.7
4,955,471 + ABID97_RS23960 0.28 +6.2
4,955,471 + ABID97_RS23960 0.28 +5.8
4,955,471 + ABID97_RS23960 0.28 +6.0
4,955,471 + ABID97_RS23960 0.28 +6.2
4,955,472 - ABID97_RS23960 0.28 +6.3
4,955,472 - ABID97_RS23960 0.28 +5.9
4,955,472 - ABID97_RS23960 0.28 +6.4
4,955,474 + ABID97_RS23960 0.28 +6.4
4,955,474 + ABID97_RS23960 0.28 +5.9
4,955,474 + ABID97_RS23960 0.28 +6.1
4,955,475 - ABID97_RS23960 0.28 +5.8
4,955,475 - ABID97_RS23960 0.28 +5.7
4,955,667 - ABID97_RS23960 0.40 +5.9
4,955,762 + ABID97_RS23960 0.46 +5.6
4,955,891 + ABID97_RS23960 0.54 +6.0
4,955,891 + ABID97_RS23960 0.54 +5.9
4,955,892 - ABID97_RS23960 0.54 +5.7
4,955,892 - ABID97_RS23960 0.54 +5.8
4,956,005 + ABID97_RS23960 0.61 +6.0
4,956,005 + ABID97_RS23960 0.61 +6.9
4,956,188 + ABID97_RS23960 0.72 +5.3
4,956,189 - ABID97_RS23960 0.72 +5.9
4,956,189 - ABID97_RS23960 0.72 +6.5
4,956,518 + +5.8
4,956,519 - +6.1
4,956,519 - +5.9
4,956,777 + +5.4
4,956,777 + +6.1
4,956,973 - ABID97_RS23965 0.23 +5.5
4,957,077 + ABID97_RS23965 0.32 +5.2
4,957,116 + ABID97_RS23965 0.35 +5.6
4,957,116 + ABID97_RS23965 0.35 +5.5
4,957,116 + ABID97_RS23965 0.35 +6.0
4,957,116 + ABID97_RS23965 0.35 +5.5
4,957,116 + ABID97_RS23965 0.35 +5.9
4,957,116 + ABID97_RS23965 0.35 +5.7
4,957,117 - ABID97_RS23965 0.35 +5.4
4,957,117 - ABID97_RS23965 0.35 +4.6
4,957,155 + ABID97_RS23965 0.39 +5.7
4,957,156 - ABID97_RS23965 0.39 +5.6
4,957,284 - ABID97_RS23965 0.49 +6.0
4,957,284 - ABID97_RS23965 0.49 +5.6
4,957,332 + ABID97_RS23965 0.54 +5.7
4,957,332 + ABID97_RS23965 0.54 +6.4
4,957,435 - ABID97_RS23965 0.62 +5.7
4,957,459 - ABID97_RS23965 0.64 +5.7

Or see this region's nucleotide sequence