Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23675 and ABID97_RS23680 are separated by 25 nucleotides ABID97_RS23680 and ABID97_RS23685 are separated by 154 nucleotides ABID97_RS23685 and ABID97_RS23690 are separated by 67 nucleotides ABID97_RS23690 and ABID97_RS23695 are separated by 32 nucleotides
ABID97_RS23675: ABID97_RS23675 - transcription elongation factor GreB, at 4,903,914 to 4,904,489
_RS23675
ABID97_RS23680: ABID97_RS23680 - hypothetical protein, at 4,904,515 to 4,904,961
_RS23680
ABID97_RS23685: ABID97_RS23685 - tRNA-Arg, at 4,905,116 to 4,905,192
_RS23685
ABID97_RS23690: ABID97_RS23690 - tRNA-Ile, at 4,905,260 to 4,905,336
_RS23690
ABID97_RS23695: ABID97_RS23695 - heat-inducible transcriptional repressor HrcA, at 4,905,369 to 4,906,376
_RS23695
Position (kb) 4905
4906 Strain fitness (log2 ratio) -1
0
1 at 4904.128 kb on + strand, within ABID97_RS23675 at 4904.128 kb on + strand, within ABID97_RS23675 at 4904.260 kb on + strand, within ABID97_RS23675 at 4904.267 kb on - strand, within ABID97_RS23675 at 4904.267 kb on - strand, within ABID97_RS23675 at 4904.267 kb on - strand, within ABID97_RS23675 at 4904.378 kb on - strand, within ABID97_RS23675 at 4904.395 kb on + strand, within ABID97_RS23675 at 4904.395 kb on + strand, within ABID97_RS23675 at 4904.396 kb on - strand, within ABID97_RS23675 at 4904.396 kb on - strand, within ABID97_RS23675 at 4904.396 kb on - strand, within ABID97_RS23675 at 4904.492 kb on + strand at 4904.690 kb on + strand, within ABID97_RS23680 at 4904.690 kb on + strand, within ABID97_RS23680 at 4904.691 kb on - strand, within ABID97_RS23680 at 4904.691 kb on - strand, within ABID97_RS23680 at 4905.370 kb on + strand at 4905.439 kb on + strand at 4905.499 kb on + strand, within ABID97_RS23695 at 4905.499 kb on + strand, within ABID97_RS23695 at 4905.499 kb on + strand, within ABID97_RS23695 at 4905.847 kb on + strand, within ABID97_RS23695 at 4905.848 kb on - strand, within ABID97_RS23695 at 4905.858 kb on + strand, within ABID97_RS23695 at 4905.862 kb on + strand, within ABID97_RS23695 at 4905.862 kb on + strand, within ABID97_RS23695 at 4905.862 kb on + strand, within ABID97_RS23695 at 4905.863 kb on - strand, within ABID97_RS23695 at 4905.863 kb on - strand, within ABID97_RS23695 at 4905.863 kb on - strand, within ABID97_RS23695 at 4905.863 kb on - strand, within ABID97_RS23695 at 4905.863 kb on - strand, within ABID97_RS23695 at 4905.896 kb on - strand, within ABID97_RS23695
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,904,128 + ABID97_RS23675 0.37 +0.6 4,904,128 + ABID97_RS23675 0.37 +0.4 4,904,260 + ABID97_RS23675 0.60 -0.9 4,904,267 - ABID97_RS23675 0.61 +1.4 4,904,267 - ABID97_RS23675 0.61 -0.4 4,904,267 - ABID97_RS23675 0.61 +0.1 4,904,378 - ABID97_RS23675 0.81 -0.5 4,904,395 + ABID97_RS23675 0.84 -0.2 4,904,395 + ABID97_RS23675 0.84 -0.3 4,904,396 - ABID97_RS23675 0.84 +1.0 4,904,396 - ABID97_RS23675 0.84 -0.6 4,904,396 - ABID97_RS23675 0.84 +0.9 4,904,492 + -1.0 4,904,690 + ABID97_RS23680 0.39 +1.2 4,904,690 + ABID97_RS23680 0.39 -0.3 4,904,691 - ABID97_RS23680 0.39 -0.1 4,904,691 - ABID97_RS23680 0.39 +0.7 4,905,370 + +0.2 4,905,439 + +0.8 4,905,499 + ABID97_RS23695 0.13 +0.1 4,905,499 + ABID97_RS23695 0.13 +0.0 4,905,499 + ABID97_RS23695 0.13 +0.4 4,905,847 + ABID97_RS23695 0.47 +0.8 4,905,848 - ABID97_RS23695 0.48 -0.5 4,905,858 + ABID97_RS23695 0.49 +0.5 4,905,862 + ABID97_RS23695 0.49 +0.6 4,905,862 + ABID97_RS23695 0.49 +0.6 4,905,862 + ABID97_RS23695 0.49 +0.6 4,905,863 - ABID97_RS23695 0.49 +1.1 4,905,863 - ABID97_RS23695 0.49 +1.0 4,905,863 - ABID97_RS23695 0.49 +0.7 4,905,863 - ABID97_RS23695 0.49 +0.4 4,905,863 - ABID97_RS23695 0.49 -0.5 4,905,896 - ABID97_RS23695 0.52 +0.8
Or see this region's nucleotide sequence