Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22875 and ABID97_RS22880 overlap by 1 nucleotides ABID97_RS22880 and ABID97_RS22885 are separated by 1 nucleotides ABID97_RS22885 and ABID97_RS22890 are separated by 27 nucleotides
ABID97_RS22875: ABID97_RS22875 - ABC transporter ATP-binding protein, at 4,736,597 to 4,737,631
_RS22875
ABID97_RS22880: ABID97_RS22880 - ABC transporter permease, at 4,737,631 to 4,738,470
_RS22880
ABID97_RS22885: ABID97_RS22885 - ABC transporter permease, at 4,738,472 to 4,739,413
_RS22885
ABID97_RS22890: ABID97_RS22890 - ABC transporter substrate-binding protein, at 4,739,441 to 4,741,015
_RS22890
Position (kb) 4738
4739
4740 Strain fitness (log2 ratio) -1
0
1
2 at 4737.758 kb on + strand, within ABID97_RS22880 at 4737.758 kb on + strand, within ABID97_RS22880 at 4738.025 kb on + strand, within ABID97_RS22880 at 4738.025 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.266 kb on - strand, within ABID97_RS22880 at 4738.266 kb on - strand, within ABID97_RS22880 at 4738.504 kb on - strand at 4738.536 kb on + strand at 4738.536 kb on + strand at 4738.537 kb on - strand at 4738.780 kb on - strand, within ABID97_RS22885 at 4739.403 kb on + strand at 4739.404 kb on - strand at 4739.442 kb on + strand at 4739.487 kb on + strand at 4739.488 kb on - strand at 4739.488 kb on - strand at 4739.488 kb on - strand at 4739.488 kb on - strand at 4739.544 kb on + strand at 4739.545 kb on - strand at 4739.545 kb on - strand at 4739.545 kb on - strand at 4739.545 kb on - strand at 4739.733 kb on + strand, within ABID97_RS22890 at 4739.733 kb on + strand, within ABID97_RS22890 at 4739.733 kb on + strand, within ABID97_RS22890 at 4739.733 kb on + strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.734 kb on - strand, within ABID97_RS22890 at 4739.853 kb on + strand, within ABID97_RS22890 at 4739.854 kb on - strand, within ABID97_RS22890 at 4739.866 kb on - strand, within ABID97_RS22890 at 4739.955 kb on + strand, within ABID97_RS22890 at 4739.956 kb on - strand, within ABID97_RS22890 at 4739.979 kb on + strand, within ABID97_RS22890 at 4739.980 kb on - strand, within ABID97_RS22890 at 4740.124 kb on + strand, within ABID97_RS22890 at 4740.238 kb on - strand, within ABID97_RS22890 at 4740.360 kb on + strand, within ABID97_RS22890 at 4740.361 kb on - strand, within ABID97_RS22890
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,737,758 + ABID97_RS22880 0.15 -0.7 4,737,758 + ABID97_RS22880 0.15 +0.3 4,738,025 + ABID97_RS22880 0.47 -0.6 4,738,025 + ABID97_RS22880 0.47 -1.2 4,738,265 + ABID97_RS22880 0.75 -0.7 4,738,265 + ABID97_RS22880 0.75 -0.1 4,738,265 + ABID97_RS22880 0.75 -0.7 4,738,265 + ABID97_RS22880 0.75 +0.0 4,738,266 - ABID97_RS22880 0.76 -0.4 4,738,266 - ABID97_RS22880 0.76 +0.1 4,738,504 - +0.6 4,738,536 + +1.0 4,738,536 + +0.6 4,738,537 - -0.8 4,738,780 - ABID97_RS22885 0.33 -0.6 4,739,403 + -0.2 4,739,404 - -0.2 4,739,442 + -0.4 4,739,487 + -0.7 4,739,488 - -0.3 4,739,488 - +0.1 4,739,488 - -0.3 4,739,488 - +1.6 4,739,544 + -0.8 4,739,545 - -1.5 4,739,545 - +0.2 4,739,545 - -1.1 4,739,545 - +0.4 4,739,733 + ABID97_RS22890 0.19 +1.8 4,739,733 + ABID97_RS22890 0.19 -0.2 4,739,733 + ABID97_RS22890 0.19 -1.0 4,739,733 + ABID97_RS22890 0.19 -0.2 4,739,734 - ABID97_RS22890 0.19 -0.9 4,739,734 - ABID97_RS22890 0.19 -0.9 4,739,734 - ABID97_RS22890 0.19 +1.2 4,739,734 - ABID97_RS22890 0.19 +0.2 4,739,734 - ABID97_RS22890 0.19 -0.5 4,739,734 - ABID97_RS22890 0.19 +0.1 4,739,853 + ABID97_RS22890 0.26 -0.1 4,739,854 - ABID97_RS22890 0.26 -1.1 4,739,866 - ABID97_RS22890 0.27 -1.7 4,739,955 + ABID97_RS22890 0.33 -1.6 4,739,956 - ABID97_RS22890 0.33 +0.1 4,739,979 + ABID97_RS22890 0.34 -0.7 4,739,980 - ABID97_RS22890 0.34 -0.9 4,740,124 + ABID97_RS22890 0.43 +0.1 4,740,238 - ABID97_RS22890 0.51 +0.9 4,740,360 + ABID97_RS22890 0.58 +1.0 4,740,361 - ABID97_RS22890 0.58 -0.7
Or see this region's nucleotide sequence