Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22870

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22865 and ABID97_RS22870 overlap by 4 nucleotidesABID97_RS22870 and ABID97_RS22875 are separated by 139 nucleotides ABID97_RS22865: ABID97_RS22865 - amino acid deaminase, at 4,734,167 to 4,735,483 _RS22865 ABID97_RS22870: ABID97_RS22870 - ABC transporter ATP-binding protein, at 4,735,480 to 4,736,457 _RS22870 ABID97_RS22875: ABID97_RS22875 - ABC transporter ATP-binding protein, at 4,736,597 to 4,737,631 _RS22875 Position (kb) 4735 4736 4737Strain fitness (log2 ratio) -2 -1 0 1at 4734.582 kb on + strand, within ABID97_RS22865at 4734.606 kb on + strand, within ABID97_RS22865at 4734.607 kb on - strand, within ABID97_RS22865at 4734.786 kb on + strand, within ABID97_RS22865at 4734.787 kb on - strand, within ABID97_RS22865at 4734.787 kb on - strand, within ABID97_RS22865at 4735.526 kb on + strandat 4735.527 kb on - strandat 4735.781 kb on + strand, within ABID97_RS22870at 4735.781 kb on + strand, within ABID97_RS22870at 4735.809 kb on - strand, within ABID97_RS22870at 4736.853 kb on + strand, within ABID97_RS22875

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,734,582 + ABID97_RS22865 0.32 +0.1
4,734,606 + ABID97_RS22865 0.33 +0.1
4,734,607 - ABID97_RS22865 0.33 +0.0
4,734,786 + ABID97_RS22865 0.47 -0.1
4,734,787 - ABID97_RS22865 0.47 -0.1
4,734,787 - ABID97_RS22865 0.47 +0.4
4,735,526 + -0.3
4,735,527 - -0.2
4,735,781 + ABID97_RS22870 0.31 -0.6
4,735,781 + ABID97_RS22870 0.31 -2.1
4,735,809 - ABID97_RS22870 0.34 -0.6
4,736,853 + ABID97_RS22875 0.25 -0.3

Or see this region's nucleotide sequence