Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22580 and ABID97_RS22585 are separated by 48 nucleotides ABID97_RS22585 and ABID97_RS22590 are separated by 151 nucleotides
ABID97_RS22580: ABID97_RS22580 - PHB depolymerase family esterase, at 4,675,983 to 4,677,047
_RS22580
ABID97_RS22585: ABID97_RS22585 - polyphosphate kinase 2, at 4,677,096 to 4,678,016
_RS22585
ABID97_RS22590: ABID97_RS22590 - transporter, at 4,678,168 to 4,679,202
_RS22590
Position (kb) 4677
4678
4679 Strain fitness (log2 ratio) -1
0
1 at 4676.648 kb on - strand, within ABID97_RS22580 at 4676.695 kb on + strand, within ABID97_RS22580 at 4676.695 kb on + strand, within ABID97_RS22580 at 4676.848 kb on + strand, within ABID97_RS22580 at 4677.331 kb on + strand, within ABID97_RS22585 at 4677.331 kb on + strand, within ABID97_RS22585 at 4677.331 kb on + strand, within ABID97_RS22585 at 4677.332 kb on - strand, within ABID97_RS22585 at 4677.332 kb on - strand, within ABID97_RS22585 at 4677.451 kb on + strand, within ABID97_RS22585 at 4677.451 kb on + strand, within ABID97_RS22585 at 4677.523 kb on + strand, within ABID97_RS22585 at 4677.575 kb on - strand, within ABID97_RS22585 at 4677.575 kb on - strand, within ABID97_RS22585 at 4677.628 kb on + strand, within ABID97_RS22585 at 4677.641 kb on - strand, within ABID97_RS22585 at 4677.850 kb on + strand, within ABID97_RS22585 at 4677.851 kb on - strand, within ABID97_RS22585 at 4677.851 kb on - strand, within ABID97_RS22585 at 4677.851 kb on - strand, within ABID97_RS22585 at 4677.943 kb on + strand at 4677.944 kb on - strand at 4678.028 kb on + strand at 4678.337 kb on - strand, within ABID97_RS22590
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,676,648 - ABID97_RS22580 0.62 +0.3 4,676,695 + ABID97_RS22580 0.67 +0.4 4,676,695 + ABID97_RS22580 0.67 +0.4 4,676,848 + ABID97_RS22580 0.81 +0.2 4,677,331 + ABID97_RS22585 0.26 +0.8 4,677,331 + ABID97_RS22585 0.26 -0.6 4,677,331 + ABID97_RS22585 0.26 -0.8 4,677,332 - ABID97_RS22585 0.26 -0.6 4,677,332 - ABID97_RS22585 0.26 +1.4 4,677,451 + ABID97_RS22585 0.39 -0.7 4,677,451 + ABID97_RS22585 0.39 -0.6 4,677,523 + ABID97_RS22585 0.46 -0.2 4,677,575 - ABID97_RS22585 0.52 -0.6 4,677,575 - ABID97_RS22585 0.52 +0.6 4,677,628 + ABID97_RS22585 0.58 +0.9 4,677,641 - ABID97_RS22585 0.59 -1.1 4,677,850 + ABID97_RS22585 0.82 +0.6 4,677,851 - ABID97_RS22585 0.82 -0.3 4,677,851 - ABID97_RS22585 0.82 -0.5 4,677,851 - ABID97_RS22585 0.82 -1.7 4,677,943 + +0.5 4,677,944 - -0.2 4,678,028 + -1.1 4,678,337 - ABID97_RS22590 0.16 +1.0
Or see this region's nucleotide sequence