Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22315 and ABID97_RS22320 are separated by 111 nucleotides ABID97_RS22320 and ABID97_RS22325 are separated by 17 nucleotides ABID97_RS22325 and ABID97_RS22330 are separated by 33 nucleotides
ABID97_RS22315: ABID97_RS22315 - LysR family transcriptional regulator, at 4,623,278 to 4,624,180
_RS22315
ABID97_RS22320: ABID97_RS22320 - glyoxylate carboligase, at 4,624,292 to 4,626,085
_RS22320
ABID97_RS22325: ABID97_RS22325 - hydroxypyruvate isomerase, at 4,626,103 to 4,626,888
_RS22325
ABID97_RS22330: ABID97_RS22330 - 2-hydroxy-3-oxopropionate reductase, at 4,626,922 to 4,627,830
_RS22330
Position (kb) 4624
4625
4626
4627 Strain fitness (log2 ratio) -1
0
1 at 4623.607 kb on - strand, within ABID97_RS22315 at 4623.841 kb on - strand, within ABID97_RS22315 at 4624.222 kb on - strand at 4624.261 kb on + strand at 4624.261 kb on + strand at 4624.262 kb on - strand at 4624.620 kb on - strand, within ABID97_RS22320 at 4624.824 kb on - strand, within ABID97_RS22320 at 4624.824 kb on - strand, within ABID97_RS22320 at 4625.165 kb on + strand, within ABID97_RS22320 at 4625.166 kb on - strand, within ABID97_RS22320 at 4625.166 kb on - strand, within ABID97_RS22320 at 4625.347 kb on + strand, within ABID97_RS22320 at 4625.508 kb on + strand, within ABID97_RS22320 at 4625.511 kb on - strand, within ABID97_RS22320 at 4625.511 kb on - strand, within ABID97_RS22320 at 4625.687 kb on + strand, within ABID97_RS22320 at 4625.688 kb on - strand, within ABID97_RS22320 at 4625.714 kb on + strand, within ABID97_RS22320 at 4625.715 kb on - strand, within ABID97_RS22320 at 4625.715 kb on - strand, within ABID97_RS22320 at 4625.759 kb on + strand, within ABID97_RS22320 at 4625.760 kb on - strand, within ABID97_RS22320 at 4625.823 kb on - strand, within ABID97_RS22320 at 4626.203 kb on - strand, within ABID97_RS22325 at 4626.640 kb on + strand, within ABID97_RS22325 at 4626.640 kb on + strand, within ABID97_RS22325 at 4626.763 kb on + strand, within ABID97_RS22325 at 4626.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,623,607 - ABID97_RS22315 0.36 +1.3 4,623,841 - ABID97_RS22315 0.62 +0.6 4,624,222 - -0.4 4,624,261 + -0.0 4,624,261 + -0.0 4,624,262 - +0.1 4,624,620 - ABID97_RS22320 0.18 +0.7 4,624,824 - ABID97_RS22320 0.30 -0.1 4,624,824 - ABID97_RS22320 0.30 +1.7 4,625,165 + ABID97_RS22320 0.49 +0.4 4,625,166 - ABID97_RS22320 0.49 +1.0 4,625,166 - ABID97_RS22320 0.49 +0.8 4,625,347 + ABID97_RS22320 0.59 +0.1 4,625,508 + ABID97_RS22320 0.68 +0.1 4,625,511 - ABID97_RS22320 0.68 -0.2 4,625,511 - ABID97_RS22320 0.68 +1.0 4,625,687 + ABID97_RS22320 0.78 -0.3 4,625,688 - ABID97_RS22320 0.78 +0.6 4,625,714 + ABID97_RS22320 0.79 +0.6 4,625,715 - ABID97_RS22320 0.79 +1.4 4,625,715 - ABID97_RS22320 0.79 +0.7 4,625,759 + ABID97_RS22320 0.82 -0.5 4,625,760 - ABID97_RS22320 0.82 +0.6 4,625,823 - ABID97_RS22320 0.85 +0.0 4,626,203 - ABID97_RS22325 0.13 -0.5 4,626,640 + ABID97_RS22325 0.68 +0.2 4,626,640 + ABID97_RS22325 0.68 +1.0 4,626,763 + ABID97_RS22325 0.84 +1.0 4,626,824 - +0.6
Or see this region's nucleotide sequence