Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22190 and ABID97_RS22195 are separated by 53 nucleotides ABID97_RS22195 and ABID97_RS22200 are separated by 2 nucleotides ABID97_RS22200 and ABID97_RS22205 are separated by 79 nucleotides
ABID97_RS22190: ABID97_RS22190 - xanthine dehydrogenase accessory protein XdhC, at 4,598,633 to 4,599,439
_RS22190
ABID97_RS22195: ABID97_RS22195 - hypothetical protein, at 4,599,493 to 4,599,996
_RS22195
ABID97_RS22200: ABID97_RS22200 - hydroxyisourate hydrolase, at 4,599,999 to 4,600,349
_RS22200
ABID97_RS22205: ABID97_RS22205 - GntR family transcriptional regulator, at 4,600,429 to 4,601,103
_RS22205
Position (kb) 4599
4600 Strain fitness (log2 ratio) -2
-1
0
1 at 4598.494 kb on - strand at 4598.494 kb on - strand at 4598.571 kb on + strand at 4598.572 kb on - strand at 4599.446 kb on + strand at 4599.480 kb on + strand at 4599.480 kb on + strand at 4599.481 kb on - strand at 4599.482 kb on + strand at 4599.507 kb on + strand at 4599.725 kb on - strand, within ABID97_RS22195 at 4600.054 kb on + strand, within ABID97_RS22200 at 4600.055 kb on - strand, within ABID97_RS22200 at 4600.202 kb on - strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.280 kb on - strand, within ABID97_RS22200 at 4600.280 kb on - strand, within ABID97_RS22200 at 4600.425 kb on + strand at 4600.425 kb on + strand at 4600.425 kb on + strand at 4600.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,598,494 - +0.1 4,598,494 - +0.8 4,598,571 + +0.1 4,598,572 - +0.5 4,599,446 + -0.5 4,599,480 + -2.4 4,599,480 + +0.0 4,599,481 - -0.5 4,599,482 + +0.1 4,599,507 + -0.4 4,599,725 - ABID97_RS22195 0.46 -1.1 4,600,054 + ABID97_RS22200 0.16 -1.0 4,600,055 - ABID97_RS22200 0.16 -0.6 4,600,202 - ABID97_RS22200 0.58 +0.9 4,600,279 + ABID97_RS22200 0.80 -0.3 4,600,279 + ABID97_RS22200 0.80 +1.0 4,600,279 + ABID97_RS22200 0.80 -0.8 4,600,280 - ABID97_RS22200 0.80 +0.2 4,600,280 - ABID97_RS22200 0.80 +0.1 4,600,425 + +1.1 4,600,425 + -1.4 4,600,425 + -1.3 4,600,426 - -0.7
Or see this region's nucleotide sequence