Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21245 and ABID97_RS21250 are separated by 17 nucleotides ABID97_RS21250 and ABID97_RS21255 are separated by 140 nucleotides ABID97_RS21255 and ABID97_RS21260 are separated by 34 nucleotides
ABID97_RS21245: ABID97_RS21245 - PaaI family thioesterase, at 4,385,635 to 4,386,180
_RS21245
ABID97_RS21250: ABID97_RS21250 - nitroreductase, at 4,386,198 to 4,386,890
_RS21250
ABID97_RS21255: ABID97_RS21255 - Fe(3+) ABC transporter substrate-binding protein, at 4,387,031 to 4,388,092
_RS21255
ABID97_RS21260: ABID97_RS21260 - iron ABC transporter permease, at 4,388,127 to 4,389,806
_RS21260
Position (kb) 4387
4388
4389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4386.261 kb on + strand at 4386.262 kb on - strand at 4386.483 kb on + strand, within ABID97_RS21250 at 4386.484 kb on - strand, within ABID97_RS21250 at 4386.484 kb on - strand, within ABID97_RS21250 at 4386.520 kb on - strand, within ABID97_RS21250 at 4386.666 kb on + strand, within ABID97_RS21250 at 4386.666 kb on + strand, within ABID97_RS21250 at 4386.924 kb on + strand at 4386.924 kb on + strand at 4386.938 kb on + strand at 4386.939 kb on - strand at 4387.149 kb on - strand, within ABID97_RS21255 at 4387.151 kb on - strand, within ABID97_RS21255 at 4387.151 kb on - strand, within ABID97_RS21255 at 4387.481 kb on + strand, within ABID97_RS21255 at 4387.544 kb on + strand, within ABID97_RS21255 at 4387.544 kb on + strand, within ABID97_RS21255 at 4387.545 kb on - strand, within ABID97_RS21255 at 4387.545 kb on - strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.712 kb on + strand, within ABID97_RS21255 at 4387.713 kb on - strand, within ABID97_RS21255 at 4387.713 kb on - strand, within ABID97_RS21255 at 4387.715 kb on + strand, within ABID97_RS21255 at 4387.715 kb on + strand, within ABID97_RS21255 at 4387.716 kb on - strand, within ABID97_RS21255 at 4387.716 kb on - strand, within ABID97_RS21255 at 4387.716 kb on - strand, within ABID97_RS21255 at 4387.925 kb on + strand, within ABID97_RS21255 at 4387.926 kb on - strand, within ABID97_RS21255 at 4387.940 kb on + strand, within ABID97_RS21255 at 4387.940 kb on + strand, within ABID97_RS21255 at 4387.940 kb on + strand, within ABID97_RS21255 at 4387.941 kb on - strand, within ABID97_RS21255 at 4387.947 kb on - strand, within ABID97_RS21255 at 4388.470 kb on - strand, within ABID97_RS21260 at 4388.613 kb on + strand, within ABID97_RS21260 at 4388.614 kb on - strand, within ABID97_RS21260 at 4388.619 kb on + strand, within ABID97_RS21260 at 4388.619 kb on + strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.620 kb on - strand, within ABID97_RS21260 at 4388.835 kb on + strand, within ABID97_RS21260 at 4388.835 kb on + strand, within ABID97_RS21260 at 4389.072 kb on + strand, within ABID97_RS21260 at 4389.072 kb on + strand, within ABID97_RS21260 at 4389.072 kb on + strand, within ABID97_RS21260 at 4389.073 kb on - strand, within ABID97_RS21260 at 4389.073 kb on - strand, within ABID97_RS21260 at 4389.073 kb on - strand, within ABID97_RS21260
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,386,261 + -0.8 4,386,262 - -0.8 4,386,483 + ABID97_RS21250 0.41 -0.7 4,386,484 - ABID97_RS21250 0.41 +1.6 4,386,484 - ABID97_RS21250 0.41 -0.5 4,386,520 - ABID97_RS21250 0.46 +0.0 4,386,666 + ABID97_RS21250 0.68 +1.4 4,386,666 + ABID97_RS21250 0.68 -0.2 4,386,924 + -0.8 4,386,924 + +1.4 4,386,938 + -0.6 4,386,939 - -0.6 4,387,149 - ABID97_RS21255 0.11 -2.1 4,387,151 - ABID97_RS21255 0.11 +1.0 4,387,151 - ABID97_RS21255 0.11 -0.3 4,387,481 + ABID97_RS21255 0.42 +1.9 4,387,544 + ABID97_RS21255 0.48 -0.2 4,387,544 + ABID97_RS21255 0.48 -0.5 4,387,545 - ABID97_RS21255 0.48 +1.1 4,387,545 - ABID97_RS21255 0.48 +0.2 4,387,712 + ABID97_RS21255 0.64 -1.0 4,387,712 + ABID97_RS21255 0.64 +0.3 4,387,712 + ABID97_RS21255 0.64 -0.4 4,387,712 + ABID97_RS21255 0.64 -0.4 4,387,712 + ABID97_RS21255 0.64 +1.6 4,387,712 + ABID97_RS21255 0.64 -0.0 4,387,713 - ABID97_RS21255 0.64 +0.4 4,387,713 - ABID97_RS21255 0.64 +0.3 4,387,715 + ABID97_RS21255 0.64 +0.4 4,387,715 + ABID97_RS21255 0.64 +1.8 4,387,716 - ABID97_RS21255 0.65 -0.2 4,387,716 - ABID97_RS21255 0.65 +0.3 4,387,716 - ABID97_RS21255 0.65 +0.2 4,387,925 + ABID97_RS21255 0.84 +0.4 4,387,926 - ABID97_RS21255 0.84 -0.0 4,387,940 + ABID97_RS21255 0.86 +0.5 4,387,940 + ABID97_RS21255 0.86 -0.2 4,387,940 + ABID97_RS21255 0.86 -0.6 4,387,941 - ABID97_RS21255 0.86 -0.5 4,387,947 - ABID97_RS21255 0.86 -0.0 4,388,470 - ABID97_RS21260 0.20 +0.4 4,388,613 + ABID97_RS21260 0.29 +0.9 4,388,614 - ABID97_RS21260 0.29 +0.1 4,388,619 + ABID97_RS21260 0.29 +0.4 4,388,619 + ABID97_RS21260 0.29 -1.0 4,388,620 - ABID97_RS21260 0.29 +0.1 4,388,620 - ABID97_RS21260 0.29 -0.1 4,388,620 - ABID97_RS21260 0.29 -0.3 4,388,620 - ABID97_RS21260 0.29 +0.4 4,388,620 - ABID97_RS21260 0.29 -0.2 4,388,620 - ABID97_RS21260 0.29 +0.4 4,388,835 + ABID97_RS21260 0.42 -0.7 4,388,835 + ABID97_RS21260 0.42 -0.4 4,389,072 + ABID97_RS21260 0.56 -0.4 4,389,072 + ABID97_RS21260 0.56 -0.9 4,389,072 + ABID97_RS21260 0.56 -0.5 4,389,073 - ABID97_RS21260 0.56 +0.2 4,389,073 - ABID97_RS21260 0.56 +0.2 4,389,073 - ABID97_RS21260 0.56 +1.6
Or see this region's nucleotide sequence