Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20695 and ABID97_RS20700 are separated by 106 nucleotides ABID97_RS20700 and ABID97_RS20705 are separated by 121 nucleotides ABID97_RS20705 and ABID97_RS20710 are separated by 18 nucleotides
ABID97_RS20695: ABID97_RS20695 - metalloprotease PmbA, at 4,273,264 to 4,274,634
_RS20695
ABID97_RS20700: ABID97_RS20700 - ribosome biogenesis factor YjgA, at 4,274,741 to 4,275,397
_RS20700
ABID97_RS20705: ABID97_RS20705 - molybdopterin adenylyltransferase, at 4,275,519 to 4,276,109
_RS20705
ABID97_RS20710: ABID97_RS20710 - cation:proton antiporter, at 4,276,128 to 4,277,399
_RS20710
Position (kb) 4275
4276
4277 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4274.595 kb on - strand at 4274.643 kb on + strand at 4274.643 kb on + strand at 4274.643 kb on + strand at 4274.648 kb on + strand at 4274.649 kb on - strand at 4274.649 kb on - strand at 4274.766 kb on - strand at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4277.098 kb on + strand, within ABID97_RS20710
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,274,595 - +0.5 4,274,643 + -0.3 4,274,643 + -1.1 4,274,643 + -0.2 4,274,648 + +0.1 4,274,649 - -0.7 4,274,649 - -0.1 4,274,766 - +0.9 4,275,585 + ABID97_RS20705 0.11 -1.1 4,275,585 + ABID97_RS20705 0.11 -2.4 4,275,585 + ABID97_RS20705 0.11 -3.7 4,275,586 - ABID97_RS20705 0.11 -0.4 4,275,586 - ABID97_RS20705 0.11 +0.5 4,275,586 - ABID97_RS20705 0.11 -1.1 4,275,586 - ABID97_RS20705 0.11 -1.1 4,275,586 - ABID97_RS20705 0.11 -1.5 4,275,586 - ABID97_RS20705 0.11 -0.4 4,277,098 + ABID97_RS20710 0.76 -0.1
Or see this region's nucleotide sequence