Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20530 and ABID97_RS20535 are separated by 10 nucleotides ABID97_RS20535 and ABID97_RS20540 are separated by 121 nucleotides ABID97_RS20540 and ABID97_RS20545 are separated by 190 nucleotides
ABID97_RS20530: ABID97_RS20530 - pyridoxal phosphate-dependent aminotransferase, at 4,237,056 to 4,238,213
_RS20530
ABID97_RS20535: ABID97_RS20535 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,238,224 to 4,239,504
_RS20535
ABID97_RS20540: ABID97_RS20540 - Hsp20/alpha crystallin family protein, at 4,239,626 to 4,239,997
_RS20540
ABID97_RS20545: ABID97_RS20545 - alpha/beta hydrolase-fold protein, at 4,240,188 to 4,240,946
_RS20545
Position (kb) 4238
4239
4240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.259 kb on - strand, within ABID97_RS20530 at 4237.563 kb on - strand, within ABID97_RS20530 at 4237.606 kb on + strand, within ABID97_RS20530 at 4237.619 kb on - strand, within ABID97_RS20530 at 4237.619 kb on - strand, within ABID97_RS20530 at 4237.997 kb on - strand, within ABID97_RS20530 at 4238.045 kb on - strand, within ABID97_RS20530 at 4238.045 kb on - strand, within ABID97_RS20530 at 4238.226 kb on - strand at 4238.226 kb on - strand at 4238.226 kb on - strand at 4238.534 kb on + strand, within ABID97_RS20535 at 4238.534 kb on + strand, within ABID97_RS20535 at 4238.534 kb on + strand, within ABID97_RS20535 at 4238.576 kb on + strand, within ABID97_RS20535 at 4238.688 kb on - strand, within ABID97_RS20535 at 4238.688 kb on - strand, within ABID97_RS20535 at 4238.697 kb on - strand, within ABID97_RS20535 at 4238.811 kb on - strand, within ABID97_RS20535 at 4238.811 kb on - strand, within ABID97_RS20535 at 4238.931 kb on - strand, within ABID97_RS20535 at 4238.931 kb on - strand, within ABID97_RS20535 at 4238.948 kb on + strand, within ABID97_RS20535 at 4238.948 kb on + strand, within ABID97_RS20535 at 4238.949 kb on - strand, within ABID97_RS20535 at 4239.251 kb on + strand, within ABID97_RS20535 at 4239.531 kb on + strand at 4239.531 kb on + strand at 4239.532 kb on - strand at 4239.532 kb on - strand at 4239.578 kb on - strand at 4240.061 kb on + strand at 4240.071 kb on - strand at 4240.260 kb on + strand at 4240.359 kb on + strand, within ABID97_RS20545 at 4240.359 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.428 kb on + strand, within ABID97_RS20545 at 4240.428 kb on + strand, within ABID97_RS20545
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,237,258 + ABID97_RS20530 0.17 -0.5 4,237,258 + ABID97_RS20530 0.17 -0.4 4,237,258 + ABID97_RS20530 0.17 -0.7 4,237,259 - ABID97_RS20530 0.18 -0.5 4,237,563 - ABID97_RS20530 0.44 -0.1 4,237,606 + ABID97_RS20530 0.47 +0.1 4,237,619 - ABID97_RS20530 0.49 -2.7 4,237,619 - ABID97_RS20530 0.49 +0.8 4,237,997 - ABID97_RS20530 0.81 +0.1 4,238,045 - ABID97_RS20530 0.85 -1.5 4,238,045 - ABID97_RS20530 0.85 -0.0 4,238,226 - +1.0 4,238,226 - -0.7 4,238,226 - +2.3 4,238,534 + ABID97_RS20535 0.24 +0.4 4,238,534 + ABID97_RS20535 0.24 -0.4 4,238,534 + ABID97_RS20535 0.24 +0.0 4,238,576 + ABID97_RS20535 0.27 -0.1 4,238,688 - ABID97_RS20535 0.36 +0.9 4,238,688 - ABID97_RS20535 0.36 +0.1 4,238,697 - ABID97_RS20535 0.37 +0.4 4,238,811 - ABID97_RS20535 0.46 -0.1 4,238,811 - ABID97_RS20535 0.46 -0.2 4,238,931 - ABID97_RS20535 0.55 +1.2 4,238,931 - ABID97_RS20535 0.55 -0.2 4,238,948 + ABID97_RS20535 0.57 +0.0 4,238,948 + ABID97_RS20535 0.57 +0.3 4,238,949 - ABID97_RS20535 0.57 +0.3 4,239,251 + ABID97_RS20535 0.80 +0.3 4,239,531 + +0.2 4,239,531 + +0.5 4,239,532 - +1.0 4,239,532 - -0.5 4,239,578 - +0.7 4,240,061 + +0.5 4,240,071 - +1.6 4,240,260 + -0.2 4,240,359 + ABID97_RS20545 0.23 +0.3 4,240,359 + ABID97_RS20545 0.23 -0.2 4,240,365 + ABID97_RS20545 0.23 -0.5 4,240,365 + ABID97_RS20545 0.23 -0.1 4,240,365 + ABID97_RS20545 0.23 +0.1 4,240,366 - ABID97_RS20545 0.23 +0.5 4,240,366 - ABID97_RS20545 0.23 +1.8 4,240,366 - ABID97_RS20545 0.23 -0.2 4,240,428 + ABID97_RS20545 0.32 -0.3 4,240,428 + ABID97_RS20545 0.32 +0.5
Or see this region's nucleotide sequence