Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20195 and ABID97_RS20200 are separated by 13 nucleotides ABID97_RS20200 and ABID97_RS20205 are separated by 181 nucleotides ABID97_RS20205 and ABID97_RS20210 overlap by 4 nucleotides
ABID97_RS20195: ABID97_RS20195 - phosphopyruvate hydratase, at 4,171,225 to 4,172,508
_RS20195
ABID97_RS20200: ABID97_RS20200 - cell division protein FtsB, at 4,172,522 to 4,172,800
_RS20200
ABID97_RS20205: ABID97_RS20205 - nicotinamide riboside transporter PnuC, at 4,172,982 to 4,173,605
_RS20205
ABID97_RS20210: ABID97_RS20210 - ATP-binding protein, at 4,173,602 to 4,174,300
_RS20210
Position (kb) 4172
4173 Strain fitness (log2 ratio) -1
0
1
2 at 4172.494 kb on + strand at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.138 kb on + strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.139 kb on - strand, within ABID97_RS20205 at 4173.168 kb on + strand, within ABID97_RS20205 at 4173.476 kb on - strand, within ABID97_RS20205 at 4173.526 kb on - strand, within ABID97_RS20205 at 4173.558 kb on + strand at 4173.559 kb on - strand at 4173.735 kb on - strand, within ABID97_RS20210
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,172,494 + +0.4 4,173,138 + ABID97_RS20205 0.25 +0.9 4,173,138 + ABID97_RS20205 0.25 +0.5 4,173,138 + ABID97_RS20205 0.25 +0.2 4,173,139 - ABID97_RS20205 0.25 +0.5 4,173,139 - ABID97_RS20205 0.25 +0.4 4,173,139 - ABID97_RS20205 0.25 +0.2 4,173,168 + ABID97_RS20205 0.30 +0.8 4,173,476 - ABID97_RS20205 0.79 +1.8 4,173,526 - ABID97_RS20205 0.87 -0.7 4,173,558 + +0.3 4,173,559 - +0.5 4,173,735 - ABID97_RS20210 0.19 +0.9
Or see this region's nucleotide sequence