Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20095 and ABID97_RS20100 are separated by 156 nucleotides ABID97_RS20100 and ABID97_RS20105 overlap by 4 nucleotides ABID97_RS20105 and ABID97_RS20110 are separated by 285 nucleotides
ABID97_RS20095: ABID97_RS20095 - DNA topoisomerase IV subunit B, at 4,154,476 to 4,156,473
_RS20095
ABID97_RS20100: ABID97_RS20100 - DUF2846 domain-containing protein, at 4,156,630 to 4,157,082
_RS20100
ABID97_RS20105: ABID97_RS20105 - hypothetical protein, at 4,157,079 to 4,157,396
_RS20105
ABID97_RS20110: ABID97_RS20110 - MFS transporter, at 4,157,682 to 4,158,905
_RS20110
Position (kb) 4157
4158 Strain fitness (log2 ratio) -1
0
1 at 4156.113 kb on - strand, within ABID97_RS20095 at 4156.358 kb on + strand at 4156.486 kb on + strand at 4156.535 kb on + strand at 4156.536 kb on - strand at 4156.631 kb on + strand at 4156.631 kb on + strand at 4156.631 kb on + strand at 4156.632 kb on - strand at 4156.657 kb on - strand at 4156.658 kb on + strand at 4156.826 kb on + strand, within ABID97_RS20100 at 4156.826 kb on + strand, within ABID97_RS20100 at 4156.826 kb on + strand, within ABID97_RS20100 at 4156.826 kb on + strand, within ABID97_RS20100 at 4156.827 kb on - strand, within ABID97_RS20100 at 4156.827 kb on - strand, within ABID97_RS20100 at 4156.827 kb on - strand, within ABID97_RS20100 at 4156.851 kb on - strand, within ABID97_RS20100 at 4156.851 kb on - strand, within ABID97_RS20100 at 4156.851 kb on - strand, within ABID97_RS20100 at 4156.851 kb on - strand, within ABID97_RS20100 at 4156.949 kb on + strand, within ABID97_RS20100 at 4156.950 kb on - strand, within ABID97_RS20100 at 4156.996 kb on - strand, within ABID97_RS20100 at 4157.129 kb on - strand, within ABID97_RS20105 at 4157.149 kb on + strand, within ABID97_RS20105 at 4157.149 kb on + strand, within ABID97_RS20105 at 4157.150 kb on - strand, within ABID97_RS20105 at 4157.303 kb on + strand, within ABID97_RS20105 at 4157.304 kb on - strand, within ABID97_RS20105 at 4157.306 kb on - strand, within ABID97_RS20105 at 4157.618 kb on + strand at 4157.719 kb on + strand at 4157.940 kb on + strand, within ABID97_RS20110 at 4157.941 kb on - strand, within ABID97_RS20110 at 4158.039 kb on + strand, within ABID97_RS20110 at 4158.039 kb on + strand, within ABID97_RS20110 at 4158.039 kb on + strand, within ABID97_RS20110 at 4158.040 kb on - strand, within ABID97_RS20110 at 4158.040 kb on - strand, within ABID97_RS20110 at 4158.051 kb on + strand, within ABID97_RS20110 at 4158.321 kb on + strand, within ABID97_RS20110 at 4158.351 kb on + strand, within ABID97_RS20110
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,156,113 - ABID97_RS20095 0.82 +1.7 4,156,358 + -0.9 4,156,486 + -0.4 4,156,535 + +0.4 4,156,536 - -0.2 4,156,631 + -0.8 4,156,631 + -0.0 4,156,631 + -0.6 4,156,632 - +1.2 4,156,657 - -0.3 4,156,658 + -0.0 4,156,826 + ABID97_RS20100 0.43 +0.7 4,156,826 + ABID97_RS20100 0.43 +0.3 4,156,826 + ABID97_RS20100 0.43 -0.4 4,156,826 + ABID97_RS20100 0.43 +0.3 4,156,827 - ABID97_RS20100 0.43 +0.3 4,156,827 - ABID97_RS20100 0.43 -0.2 4,156,827 - ABID97_RS20100 0.43 -0.6 4,156,851 - ABID97_RS20100 0.49 -0.1 4,156,851 - ABID97_RS20100 0.49 -0.3 4,156,851 - ABID97_RS20100 0.49 -0.1 4,156,851 - ABID97_RS20100 0.49 +0.3 4,156,949 + ABID97_RS20100 0.70 -0.4 4,156,950 - ABID97_RS20100 0.71 +0.7 4,156,996 - ABID97_RS20100 0.81 +0.1 4,157,129 - ABID97_RS20105 0.16 +1.0 4,157,149 + ABID97_RS20105 0.22 +0.2 4,157,149 + ABID97_RS20105 0.22 -0.7 4,157,150 - ABID97_RS20105 0.22 +1.5 4,157,303 + ABID97_RS20105 0.70 -0.2 4,157,304 - ABID97_RS20105 0.71 +0.1 4,157,306 - ABID97_RS20105 0.71 -0.5 4,157,618 + +0.3 4,157,719 + -0.1 4,157,940 + ABID97_RS20110 0.21 +1.5 4,157,941 - ABID97_RS20110 0.21 -0.9 4,158,039 + ABID97_RS20110 0.29 -0.1 4,158,039 + ABID97_RS20110 0.29 -0.6 4,158,039 + ABID97_RS20110 0.29 -0.3 4,158,040 - ABID97_RS20110 0.29 +0.0 4,158,040 - ABID97_RS20110 0.29 -0.0 4,158,051 + ABID97_RS20110 0.30 -0.4 4,158,321 + ABID97_RS20110 0.52 -0.2 4,158,351 + ABID97_RS20110 0.55 -1.4
Or see this region's nucleotide sequence